Clone FMO11042 Report

Search the DGRC for FMO11042

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptDh31-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11042.5prime Sequence

377 bp (377 high quality bases) assembled on 2011-11-18

> FMO11042.5prime
CAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTC
TTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATGCCCAGGTA
CCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGAGGAGG
TGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCACCATC
ATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGACTTTGG
CTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCATGGGTC
TGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGATCCGAG
ACCGATGTCGCAAGCTTTCTAGACCAT

FMO11042.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RC 1295 CG13094-RC 143..493 9..359 1755 100 Plus
Dh31-RA 1292 CG13094-RA 143..490 9..359 1700 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8492670..8492802 359..227 665 100 Minus
2L 23513712 2L 8492967..8493092 226..101 630 100 Minus
2L 23513712 2L 8493744..8493835 100..9 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:59:00 has no hits.

FMO11042.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:26 Download gff for FMO11042.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RC 143..497 9..364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:38 Download gff for FMO11042.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RC 143..497 9..364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:14 Download gff for FMO11042.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RC 143..497 9..364 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:14 Download gff for FMO11042.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8492666..8492802 227..364 98 <- Minus
2L 8492967..8493092 101..226 100 <- Minus
2L 8493744..8493835 9..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:38 Download gff for FMO11042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8492666..8492802 227..364 98 <- Minus
arm_2L 8492967..8493092 101..226 100 <- Minus
arm_2L 8493744..8493835 9..100 100   Minus