FMO11042.5prime Sequence
377 bp (377 high quality bases) assembled on 2011-11-18
> FMO11042.5prime
CAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTC
TTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATGCCCAGGTA
CCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGAGGAGG
TGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCACCATC
ATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGACTTTGG
CTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCATGGGTC
TGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGATCCGAG
ACCGATGTCGCAAGCTTTCTAGACCAT
FMO11042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 9..359 | 1755 | 100 | Plus |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 9..359 | 1700 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 359..227 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493092 | 226..101 | 630 | 100 | Minus |
2L | 23513712 | 2L | 8493744..8493835 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:00 has no hits.
FMO11042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:26 Download gff for
FMO11042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:38 Download gff for
FMO11042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:14 Download gff for
FMO11042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:14 Download gff for
FMO11042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492666..8492802 | 227..364 | 98 | <- | Minus |
2L | 8492967..8493092 | 101..226 | 100 | <- | Minus |
2L | 8493744..8493835 | 9..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:38 Download gff for
FMO11042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8492666..8492802 | 227..364 | 98 | <- | Minus |
arm_2L | 8492967..8493092 | 101..226 | 100 | <- | Minus |
arm_2L | 8493744..8493835 | 9..100 | 100 | | Minus |