FMO11044.5prime Sequence
875 bp (875 high quality bases) assembled on 2011-11-18
> FMO11044.5prime
CAGTCGACATGGGCAATGCCGGCTACACTTGCATACGCCGCACATTCTGC
TGGCTCAACATCATTCTATGGTTATGTAGCTGTGCGTTTTTAGGAGCGGG
ACTCTGGTTGCGACTGAGCTACGCGGGATACGCCACTTTGCTGCCCCAGC
ACGCAGGTCTGAGTGCGGACACCATCTTCATGGGCATCGGGGGCACCGGA
TTTGTGGTCAGCTTCTTTGGCTGCTGCGGCGCCTGGGTGCAATCCCGCTG
TCTCCTGGTATTGTACTTTATGCTGATTGTAATGCTGTTCATGAGCGAGT
TCCTGGTTGGCTCCATCGCCTTTCTCTTCCGCGGCGGACTGGGACGGACT
TTGGCCAACGAGCTGCGCTTCGGGATCGAGCGGCATTATAACAGCAGCGA
TCGGGGATCTCTGGTGGCGCCTTCGGTGGCCTCCATTTGGGACAGCGTGC
AGCAGTCGTTCGAGTGTTGCGGCGTTTCCTCCTACGAGGATTGGTATGAC
ATTCAGTCGTGGCCAGGCAGGCGCTGGGTGCCAGAGTCCTGCTGCAGGAC
CCTCTACGACCAGCGCCAGGTGCTCACCGAAGGATCCGGCGACGGAATGA
TGCGTCCCGACTGCGGCAGATCTGAGAATCCGTCGCTGTGGTGGGACAAG
GGCTGTGCCCACTCGCTGCAGAGCTGGTTCACCGGCCAGCTGAACGTGGT
GGGCGCCGTGGGACTGGGCATCGCCTTTGTCCAGCTGTTCGGGCTGATCA
CCTCGATGCTGCTGTTCTGCACGGTGAAACACAAGCGGGCCTCGGACACC
TACAATCATACTCCCCGTCGATTGATCCTCAGACCCGCACCAGCAGTTGG
GAAGATGCAGCTTTCTAAACCATTC
FMO11044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 1827 | CG4690-RC | 145..993 | 9..856 | 4205 | 99.8 | Plus |
| Tsp5D-RB | 1827 | CG4690-RB | 145..993 | 9..856 | 4205 | 99.8 | Plus |
| Tsp5D-RA | 1972 | CG4690-RA | 290..1138 | 9..856 | 4205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6069965..6070204 | 856..618 | 1135 | 99.2 | Minus |
| X | 23542271 | X | 6070521..6070716 | 458..263 | 980 | 100 | Minus |
| X | 23542271 | X | 6070857..6071049 | 263..71 | 965 | 100 | Minus |
| X | 23542271 | X | 6070293..6070454 | 619..458 | 810 | 100 | Minus |
| X | 23542271 | X | 6071805..6071867 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:11 has no hits.
FMO11044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:27 Download gff for
FMO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RB | 140..993 | 1..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:43 Download gff for
FMO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 285..1138 | 1..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:17 Download gff for
FMO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 285..1138 | 1..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:17 Download gff for
FMO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6069965..6070202 | 620..856 | 99 | <- | Minus |
| X | 6070521..6070715 | 264..458 | 100 | <- | Minus |
| X | 6070293..6070453 | 459..619 | 100 | <- | Minus |
| X | 6070857..6071048 | 72..263 | 100 | <- | Minus |
| X | 6071805..6071871 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:43 Download gff for
FMO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5963998..5964235 | 620..856 | 99 | <- | Minus |
| arm_X | 5964326..5964486 | 459..619 | 100 | <- | Minus |
| arm_X | 5964554..5964748 | 264..458 | 100 | <- | Minus |
| arm_X | 5964890..5965081 | 72..263 | 100 | <- | Minus |
| arm_X | 5965838..5965904 | 1..71 | 94 | | Minus |
