Clone FMO11046 Report

Search the DGRC for FMO11046

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10433-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11046.5prime Sequence

407 bp (407 high quality bases) assembled on 2011-11-18

> FMO11046.5prime
CAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGCTGGTGAGC
AGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACAAACGATGT
GAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTATCCCAATG
ACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGTCGGACTGC
ATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCCGGAGAGGG
CGTGGAGTGCTGCTACGAACTGCCGGTCAGACCAGCGCCCTGTGCGGAAC
ACCTGGGACAGTGCATGGACCGATGCCACCAGAGGCTCCTGCGACCCGGT
TCGGATTGCAAGAATGGCCAAGTCTGCTGCGTCCTGATTGCAAGCTTTCT
AGACCAT

FMO11046.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10433-RC 1945 CG10433-RC 1166..1546 9..389 1905 100 Plus
CG10433-RA 945 CG10433-RA 166..546 9..389 1905 100 Plus
CG10433-RB 1112 CG10433-RB 166..439 9..283 1320 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21606468..21606617 270..121 750 100 Minus
2R 25286936 2R 21606075..21606193 389..271 595 100 Minus
2R 25286936 2R 21606681..21606792 120..9 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:57:52 has no hits.

FMO11046.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:21 Download gff for FMO11046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RA 153..547 1..397 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:07 Download gff for FMO11046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RA 157..551 1..397 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:48 Download gff for FMO11046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10433-RA 157..551 1..397 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:48 Download gff for FMO11046.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21606070..21606193 271..397 96 <- Minus
2R 21606468..21606617 121..270 100 <- Minus
2R 21606681..21606800 1..120 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:07 Download gff for FMO11046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17493575..17493698 271..397 96 <- Minus
arm_2R 17493973..17494122 121..270 100 <- Minus
arm_2R 17494186..17494305 1..120 96   Minus