Clone FMO11048 Report

Search the DGRC for FMO11048

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRbp1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11048.5prime Sequence

431 bp (431 high quality bases) assembled on 2011-11-18

> FMO11048.5prime
CAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCAAGGTGTAC
GTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAAGGCGCATT
TGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAATCCACCAG
GTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAGACGCAACG
CGTGCCCTGGACGGAACACGCTGCTGCGGCACTAGGATTCGCGTAGAGAT
GTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGGCAGTAGTG
GTCGCTCTGGTTCCGGACGCTACAGGTCACGTTCGCCACGTCGCTCCCGA
TCGCCCCGCAGCCGCAGCTTCTCGCGCGATCGTCGAAGTCGCTCGGATTC
TCGGGATCGTCATGCAAGCTTTCTAGACCAT

FMO11048.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RA 773 CG17136-RA 149..553 9..413 2025 100 Plus
Rbp1-RD 1528 CG17136-RD 149..466 9..326 1590 100 Plus
Rbp1-like-RC 1456 CG1987-RC 208..413 27..232 460 81.6 Plus
Rbp1-RD 1528 CG17136-RD 1218..1308 323..413 455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784925 9..327 1595 100 Plus
X 23542271 X 13384465..13384670 232..27 460 81.6 Minus
3R 32079331 3R 10786155..10786245 323..413 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:09 has no hits.

FMO11048.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:22 Download gff for FMO11048.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 150..563 9..423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:15 Download gff for FMO11048.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 149..562 9..423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:53 Download gff for FMO11048.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 149..562 9..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:53 Download gff for FMO11048.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 9..325 100 -> Plus
3R 10786158..10786254 326..423 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:15 Download gff for FMO11048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 9..325 100 -> Plus
arm_3R 6611880..6611976 326..423 95   Plus