FMO11049.5prime Sequence
578 bp (578 high quality bases) assembled on 2011-11-18
> FMO11049.5prime
CAGTCGACATGACGGCCAAGATGAAGCTGCGGTCCCAGCTGCATCTGCTC
ACTGGTTTCATGGCTGGATTCGTGCTGGCCTTCGTGCTCCTCCTCTACGT
CTACGATGTCAGCAGGGTGACGCCCTGCTGGAGCAGCACCTCCACCATGA
CCACGGCCACAACGGCCAGGATTGAGGATGGTCCACCACCGCGCATTCTG
TGCATGGTGCTCACCTGTCCGGAGAACGTGCAGAGCCTGGCCAGAAGTGT
CTACGAGACCTGGGGCCAGCGCTGCAGCCGCCTGATCTTCGCCAGCAGCG
AGGACTACGAGCCACTGGGCGTGGTCGGTGTGGTGGAGCCAACTGGCGGT
GGCTACGAGGATCTGTGGAATAAAACGCGCGAGGGATTCCGACACGTTTG
GGAGCACTACGCTGGCGACTACGATTGGTTCCTCAAGGCAGATGACGATA
CGTACGTGGTCATGGAGAATCTGCAGCACCTGCTCCGTGGCTTCGATCCG
AATACGCCCGTCTTCTTTGGCTACAAGATGTCGCGATACAATGTGCTTCT
GCATTTTGAAGCAAGCTTTCTAGACCAT
FMO11049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RB | 682 | CG3119-RB | 46..597 | 9..560 | 2760 | 100 | Plus |
| CG3119-RA | 1193 | CG3119-RA | 46..582 | 9..545 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2837344..2837788 | 453..9 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 2837193..2837286 | 545..452 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:52 has no hits.
FMO11049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:30 Download gff for
FMO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RB | 36..603 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:05 Download gff for
FMO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RB | 38..605 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:34 Download gff for
FMO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RB | 38..605 | 1..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:34 Download gff for
FMO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2837193..2837286 | 452..545 | 100 | <- | Minus |
| 2L | 2837346..2837796 | 1..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:05 Download gff for
FMO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2837193..2837286 | 452..545 | 100 | <- | Minus |
| arm_2L | 2837346..2837796 | 1..451 | 99 | | Minus |
