FMO11050.5prime Sequence
605 bp (605 high quality bases) assembled on 2011-11-18
> FMO11050.5prime
CAGTCGACATGATTGGTGTGCCACAATCTTGGATCGAACTCAGCACAACA
GCTGCGATGGCTGGCATCAAGAGCCCCGACAGAATCACTCCGTTGCCATT
CAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCCCAGCGCGAGT
CGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTCGTGATACG
CCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGTCGGAGCTCTG
TCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGGACCAAGGGAG
GAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAACTGGAATCAG
CCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATGCCGGCGACGA
GGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGTTTGAAGCGAC
TGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTCGCTGCTGGTG
ACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTATGGTTGAG
CAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACGCAAGCTTTCTAG
ACCAT
FMO11050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RB | 1344 | CG5059-RB | 28..607 | 8..587 | 2900 | 100 | Plus |
| CG5059-RC | 1905 | CG5059-RC | 605..1169 | 23..587 | 2825 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 243..806 | 24..587 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516136 | 304..21 | 1375 | 98.9 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 539..356 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 358..295 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 587..538 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:01 has no hits.
FMO11050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:31 Download gff for
FMO11050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 10..602 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:08 Download gff for
FMO11050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 21..613 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:38 Download gff for
FMO11050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 21..613 | 1..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:38 Download gff for
FMO11050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515725..20515786 | 297..358 | 100 | <- | Minus |
| 3L | 20515329..20515383 | 539..592 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 359..538 | 100 | <- | Minus |
| 3L | 20515861..20516132 | 25..296 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:08 Download gff for
FMO11050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 539..592 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 359..538 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 297..358 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 25..296 | 100 | <- | Minus |
