FMO11051.5prime Sequence
662 bp (662 high quality bases) assembled on 2011-11-18
> FMO11051.5prime
CAGTCGACATGGGAGCTTTGTTTGGAAAAACCAGCAAAAAGACGGCTCCT
AGTCGGATCACCGACCAGGACAAGGCGGTTCTGCAATTGAAGCAACAGAG
GGATCGTCTGAAGCAGTACCAAAAACGCATCGAGACGCAGTTGGAGAATG
ATCGCCTCCTGGCAAGGAAGTGCCTACAGCAAGGTCGCAAGGACCGGGCC
AAGCTGCTGCTGCGCAAGAAGAAGTACCAGGAGAGTCTGCTGACCAATGC
CGACAAACAGCTGGAAAACCTGGAGAAGCTGGCTGCGGACATTGAGTTCG
CCCAGGTGGAGATGAAGGTGCTGGACGGCCTCAAAGCGGGCAATGCTGCT
CTGAAGAAGGTGCACGAAATGCTTGACATCGACGAAGTTGAGCGAATCAT
GGACGAGACACGCGAGGGCATCGAAAAGCAGCAGGAAATAGACGCCATAC
TGACGGATGTGCTGACCACGCAGGACGAGGAGGACGTTTTGGCCGAGCTG
GATGCCCTGGAGGCGGAGGAAGAGCAGCAGAAGGGTGCACAGCTGCCGGA
TGTGCCCACCGAAGATCTGCCCATTCCCGCTGAGATCGAGTCCGTCGAGG
AGCCGGCAAAGACCAAAGCAACCAAGAAAGTCCTGGTGGAGGCAGCAAGC
TTTCTAGACCAT
FMO11051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps20-RC | 899 | CG4071-RC | 150..786 | 8..644 | 3185 | 100 | Plus |
| Vps20-RA | 772 | CG4071-RA | 23..659 | 8..644 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22608856..22609306 | 194..644 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 22608683..22608793 | 83..193 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 22608543..22608618 | 8..83 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:55:13 has no hits.
FMO11051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:32 Download gff for
FMO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 3..647 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:19 Download gff for
FMO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 15..659 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:38 Download gff for
FMO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 15..659 | 1..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:38 Download gff for
FMO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22608535..22608618 | 1..83 | 95 | -> | Plus |
| 2R | 22608684..22608793 | 84..193 | 100 | -> | Plus |
| 2R | 22608856..22609306 | 194..644 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:19 Download gff for
FMO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18496040..18496123 | 1..83 | 95 | -> | Plus |
| arm_2R | 18496189..18496298 | 84..193 | 100 | -> | Plus |
| arm_2R | 18496361..18496811 | 194..644 | 100 | | Plus |
