FMO11052.5prime Sequence
839 bp (839 high quality bases) assembled on 2011-11-18
> FMO11052.5prime
CAGTCGACATGCTGAAGGGTTACAAGACGGATGAGGACAAGAAGGTGAAG
CGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATATCCGGAGCT
CTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGGCGCACTGCAAGA
TCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATCAAGCAGCACCTC
GCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAACATTCTTGCCAA
GAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATGACCCAGACTTGG
AGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCCAAATCAAAGACC
TATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAAGATCAAGAACGA
CACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGGACGAAATCGCCT
CGAACGACTCAATCCTGGATGATTTACTCAGAACAGATCAGCCCTATCAA
GAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGTACAACAGAATGA
AACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAGAGATGATACAGC
TCAAGCCGGAAGATACGGAGATTAATAACGAATACCAAGTCGACGCGATG
ACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGGCAAGAGTTTGGC
TCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAATGTGCCAGGAGC
GTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTGCTCAAGCGCAAG
AGAGAGCAAGCACGATCTTCGGCAAGCTTTCTAGACCAT
FMO11052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)05714-RB | 1082 | CG8886-RB | 190..1002 | 9..821 | 4065 | 100 | Plus |
l(2)05714-RC | 1089 | CG8886-RC | 438..1009 | 250..821 | 2860 | 100 | Plus |
l(2)05714-RA | 1049 | CG8886-RA | 398..969 | 250..821 | 2860 | 100 | Plus |
l(2)05714-RC | 1089 | CG8886-RC | 230..439 | 9..218 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4970215..4970786 | 821..250 | 2860 | 100 | Minus |
2L | 23513712 | 2L | 4971054..4971296 | 251..9 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:55:24 has no hits.
FMO11052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:32 Download gff for
FMO11052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 150..977 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:23 Download gff for
FMO11052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 150..977 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:41 Download gff for
FMO11052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 182..1009 | 1..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:41 Download gff for
FMO11052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4970208..4970784 | 252..829 | 99 | <- | Minus |
2L | 4971054..4971300 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:23 Download gff for
FMO11052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4971054..4971300 | 1..251 | 98 | | Minus |
arm_2L | 4970208..4970784 | 252..829 | 99 | <- | Minus |