Clone FMO11052 Report

Search the DGRC for FMO11052

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:52
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(2)05714-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11052.5prime Sequence

839 bp (839 high quality bases) assembled on 2011-11-18

> FMO11052.5prime
CAGTCGACATGCTGAAGGGTTACAAGACGGATGAGGACAAGAAGGTGAAG
CGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATATCCGGAGCT
CTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGGCGCACTGCAAGA
TCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATCAAGCAGCACCTC
GCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAACATTCTTGCCAA
GAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATGACCCAGACTTGG
AGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCCAAATCAAAGACC
TATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAAGATCAAGAACGA
CACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGGACGAAATCGCCT
CGAACGACTCAATCCTGGATGATTTACTCAGAACAGATCAGCCCTATCAA
GAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGTACAACAGAATGA
AACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAGAGATGATACAGC
TCAAGCCGGAAGATACGGAGATTAATAACGAATACCAAGTCGACGCGATG
ACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGGCAAGAGTTTGGC
TCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAATGTGCCAGGAGC
GTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTGCTCAAGCGCAAG
AGAGAGCAAGCACGATCTTCGGCAAGCTTTCTAGACCAT

FMO11052.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)05714-RB 1082 CG8886-RB 190..1002 9..821 4065 100 Plus
l(2)05714-RC 1089 CG8886-RC 438..1009 250..821 2860 100 Plus
l(2)05714-RA 1049 CG8886-RA 398..969 250..821 2860 100 Plus
l(2)05714-RC 1089 CG8886-RC 230..439 9..218 1050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4970215..4970786 821..250 2860 100 Minus
2L 23513712 2L 4971054..4971296 251..9 1215 100 Minus
Blast to na_te.dros performed on 2014-11-26 23:55:24 has no hits.

FMO11052.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:32 Download gff for FMO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)05714-RB 150..977 1..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:23 Download gff for FMO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)05714-RB 150..977 1..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:41 Download gff for FMO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)05714-RB 182..1009 1..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:41 Download gff for FMO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4970208..4970784 252..829 99 <- Minus
2L 4971054..4971300 1..251 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:23 Download gff for FMO11052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4971054..4971300 1..251 98   Minus
arm_2L 4970208..4970784 252..829 99 <- Minus