Clone FMO11055 Report

Search the DGRC for FMO11055

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:55
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdap-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11055.5prime Sequence

761 bp (761 high quality bases) assembled on 2011-11-18

> FMO11055.5prime
CAGTCGACATGGTCAGTGCCCGAGTCCTGAATCCTGTGATGATCAGTGAG
TTCTGCAAGATGAGCAGCAGCCCGGCGGTGAGTCGCAATCTGGCATGCGG
TCGTCAGTTGAATCGCATAAAGCGTGACCTCTTCGGTAGCTCCAAATCCG
CCGAGGGTACAGCCAACAAAACACCCTTTAATTCCGAACTGGAGCGCCAT
CAAGAACTGGCCACGCAAAAATGGGGCTTTGACTTCCGCGCCGGCTGCCC
TTTAGCTGAAAAATCACCCTACATTTGGGAGCGCGTCAGCTTCCAGGAGT
CGAGCTTCGCCCCAGAGATGTACACCCTAACACGGGCCGCCCACGTACGC
CCTTCCGCGGATGCAAGTCCTAGCGACATGGACATTTTGGTCAACGAGCG
CTCAGAACGGGAGAACTTTGGCTCCAATCTGGTCAATTCCTCGCTAGAGT
CGAACACGGATAATGAATCTTGTTACGACTCCCAGGACGAGTCGCTGGCA
ATGCGGCTTAGCTCCTCCAGCACGACAAGCACATCCTCCATAGTCCTGCG
CAAGAGACAGCCAAAAATCACAGAATTCATGAAGGAGCGCAAACGTCTGG
CCCAGGCACCCAAGAAACTATCGCCCGCAAAGCGCATGCGCACCAGTTCT
CCCAGTTCGTCCGCCACTTCCAGCTCCAGCTCCAGCGGTGGATTTGGGTT
GGGGGCACACTTTGGGGCGATGTTGAAGCGGCCGCGCCACAACGCAAGCT
TTCTAGACCAT

FMO11055.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
dap-RA 2530 CG1772-RA 618..1354 7..743 3685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9713163..9713563 173..573 2005 100 Plus
2R 25286936 2R 9714907..9715080 570..743 870 100 Plus
2R 25286936 2R 9712938..9713103 7..172 830 100 Plus
Blast to na_te.dros performed on 2014-11-26 23:55:55 has no hits.

FMO11055.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:34 Download gff for FMO11055.5prime
Subject Subject Range Query Range Percent Splice Strand
dap-RA 610..1359 1..750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:40 Download gff for FMO11055.5prime
Subject Subject Range Query Range Percent Splice Strand
dap-RA 612..1361 1..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:54 Download gff for FMO11055.5prime
Subject Subject Range Query Range Percent Splice Strand
dap-RA 612..1361 1..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:54 Download gff for FMO11055.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9714911..9715087 574..750 98   Plus
2R 9712932..9713103 1..172 98 -> Plus
2R 9713163..9713563 173..573 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:40 Download gff for FMO11055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5600437..5600608 1..172 98 -> Plus
arm_2R 5600668..5601068 173..573 100 -> Plus
arm_2R 5602416..5602592 574..750 98   Plus