FMO11056.5prime Sequence
1110 bp (1003 high quality bases) assembled on 2011-11-18
> FMO11056.5prime
CAGTCGACATGATGAACTTCTCCGCGTTCGGCGGCCCCTTCTCCGGCATC
CACCAATTTGCCGCTAAATTCGACGCCCAGACGCCGGGCGCCTTCGGCAC
GCCCCCCGCGGCTGCCGCGAATGCAGCAGCCGCAGCGGCAGCGGCCGGCA
CCGATAACCATGTGCAGCGATATCAGACCAATGGCAATCACTTTAATCAG
AATGTGCCCAACGTTTCGGCTGCCAACAACATGCAATATGGCCAGAATAT
CTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAG
CCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGAACGTGAC
CGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACCAATCCTG
GCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCACACCTGC
TCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTACTCGGAG
ACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCACCAATTT
GGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAACAACGGTG
CGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGGCGGTCAC
ATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACGGAGCTAG
CAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGTGGCGCCG
GCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAGCGGCGGC
ACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCACCAAGGAG
AAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAGGCGCTGGAT
GGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTACCCGGATCG
CAGCCTCATCGAGCAGCACGTCATCTCCGCACGCCGTTGAGCGCGCTTCG
TCTGGGACTTCTGCAATGCGCGCCTGAGCGCAGACCACCTTGACTAGGCA
CTAGCTCCCTCCCACATACTGCCAGCCGCATGGTGGTGGCAATATCTGCA
TGAGTCTTCA
FMO11056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RL | 2247 | CG6930-RL | 672..1770 | 6..1103 | 5040 | 97.9 | Plus |
| l(3)neo38-RK | 1611 | CG6930-RK | 36..1134 | 6..1103 | 5040 | 97.9 | Plus |
| l(3)neo38-RC | 2247 | CG6930-RC | 672..1770 | 6..1103 | 5040 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769442..11770105 | 1020..359 | 3095 | 99.1 | Minus |
| 3R | 32079331 | 3R | 11777474..11777681 | 213..6 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 11771154..11771301 | 360..213 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:04 has no hits.
FMO11056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:35 Download gff for
FMO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 666..1685 | 1..1020 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:45 Download gff for
FMO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 669..1688 | 1..1020 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:58 Download gff for
FMO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 669..1688 | 1..1020 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:58 Download gff for
FMO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11769419..11770103 | 361..1040 | 98 | <- | Minus |
| 3R | 11771154..11771300 | 214..360 | 100 | <- | Minus |
| 3R | 11777474..11777683 | 1..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:45 Download gff for
FMO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7596876..7597022 | 214..360 | 100 | <- | Minus |
| arm_3R | 7595141..7595825 | 361..1040 | 98 | <- | Minus |
| arm_3R | 7603196..7603405 | 1..213 | 98 | | Minus |
