FMO11058.5prime Sequence
1025 bp (1025 high quality bases) assembled on 2011-11-18
> FMO11058.5prime
CAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCGACATAAAG
CTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCGGCGGATTC
CTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTCCACATCAT
CATGCAAATTGGAGGCCAACAGGATCGACAGAACGGGACGAAACGCAGCC
ACATGTGCACTTGATTTGGACTCTTTAGGCCGACAAATACAGCGACTGCT
AAAGGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGGTTCTCAAGC
AGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCGGGACTTGGT
GTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAATGGTGGATT
AAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATCCCAACTTCA
TACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAATCTGTACACT
ATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACATTGGACCAGC
AGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAAACCCTGCTT
TGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAACACACCGAG
ATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGAGGTGAACAT
CATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTTATGAGGGCT
CTCCGCTCTGCAATGAGATCGACCTTGTCCTGTACATTTGCTACCAACTG
CTGCGCTGCAACACGCACAAAACGCAGTGGCCATGGTGCGCCTGCTGGAC
AAGCGACTGCAGAAGCAGCAGTATTTCCGGTGGATCCCAGATGTCGGTGG
CGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCTGTTACCGAA
GAAGGATCTGACGCCTGCGCTAGTGGCTTGAAAAAATGGCCAAGCTCGTG
CTCAAATGCAAGCTTTCTAGACCAT
FMO11058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RA | 1150 | CG12304-RA | 98..1090 | 9..1000 | 4820 | 99.3 | Plus |
| CG12304-RB | 1051 | CG12304-RB | 245..991 | 255..1000 | 3590 | 99.1 | Plus |
| CG12304-RB | 1051 | CG12304-RB | 98..244 | 9..155 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15584923..15585287 | 637..1000 | 1575 | 97.8 | Plus |
| 3L | 28110227 | 3L | 15584638..15584869 | 406..637 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 15584285..15584441 | 253..409 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 15583735..15583881 | 9..155 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 15583997..15584096 | 156..255 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:28 has no hits.
FMO11058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:29 Download gff for
FMO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 85..1097 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:51 Download gff for
FMO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 90..1102 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:24 Download gff for
FMO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 90..1102 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:24 Download gff for
FMO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15584287..15584439 | 255..407 | 100 | -> | Plus |
| 3L | 15584640..15584868 | 408..636 | 100 | -> | Plus |
| 3L | 15583727..15583881 | 1..155 | 97 | -> | Plus |
| 3L | 15583997..15584095 | 156..254 | 100 | -> | Plus |
| 3L | 15584923..15585299 | 637..1011 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:51 Download gff for
FMO11058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15576827..15576981 | 1..155 | 97 | -> | Plus |
| arm_3L | 15577097..15577195 | 156..254 | 100 | -> | Plus |
| arm_3L | 15577387..15577539 | 255..407 | 100 | -> | Plus |
| arm_3L | 15577740..15577968 | 408..636 | 100 | -> | Plus |
| arm_3L | 15578023..15578399 | 637..1011 | 97 | | Plus |
