FMO11059.5prime Sequence
848 bp (848 high quality bases) assembled on 2011-11-18
> FMO11059.5prime
CAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAAATGACACG
TACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGGGCCAAGAC
CGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCAGGCGATGC
GCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCAATGTGCTC
GACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCCGAACTAGG
CGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTTTGAGAAGT
GCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCGATGAGCTC
TTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGGCCGGATTG
CTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACACCTTTGCCC
AGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCGGTGACCAG
GGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGACATTAAGAA
GCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTACTGTTATC
TGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGCATTTTGCC
GGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACAAAGGTGGC
CAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCAGCTGTGGT
GGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCGAAATGATA
ATGATAACGATAGTGATCCCGCTAACCCACGCAAGCTTTCTAGACCAT
FMO11059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glycogenin-RH | 2010 | CG44244-RH | 170..958 | 9..797 | 3945 | 100 | Plus |
| Glycogenin-RG | 2447 | CG44244-RG | 170..958 | 9..797 | 3945 | 100 | Plus |
| Glycogenin-RD | 3014 | CG44244-RD | 170..958 | 9..797 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21204613..21204925 | 16..328 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 21205009..21205301 | 326..618 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 21205361..21205545 | 617..801 | 910 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:40 has no hits.
FMO11059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:29 Download gff for
FMO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RC | 179..1009 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:59 Download gff for
FMO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RD | 170..958 | 9..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:29 Download gff for
FMO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glycogenin-RD | 170..958 | 9..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:29 Download gff for
FMO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21204605..21204923 | 4..326 | 98 | -> | Plus |
| 2R | 21205010..21205299 | 327..616 | 100 | -> | Plus |
| 2R | 21205361..21205541 | 617..797 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:59 Download gff for
FMO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17092110..17092428 | 4..326 | 98 | -> | Plus |
| arm_2R | 17092515..17092804 | 327..616 | 100 | -> | Plus |
| arm_2R | 17092866..17093046 | 617..797 | 100 | -> | Plus |
