FMO11064.5prime Sequence
1102 bp (1022 high quality bases) assembled on 2011-11-18
> FMO11064.5prime
CAGTCGACATGGCGGACAGCAGGGAACGGATTCGTGGACCCTCCAGGGAT
GGTCGCGAGTTCCTGACCAGTCCGCGTCAGGTTCTTCGTCGGCTGATGCT
CCTCTCGGAGGGCAGACAGTACAGGGAGGCTGCTGGCGTGGTGGGCAGAC
TGGGTCCCTCGGTTCTCAGATCAGTGATCGCTGAGCTTCCGCTGGACCTG
CTGCTGGAGCACCTGCCTCACAGTGCCTACCTTCTGGAGTCTTTCTTTAC
CAGATTGACCACCCTGAACACCACTCCCAAGCCAGATGTGCCTAGTGAAA
CGGTGGCCTGGCAGTTGGTGCGTCTGTTCGCTAATCCCCATGAATCAGGA
CTCCGGCAGAGATGCACTCGACTCCTGCAGGCCTTGGCTCAGTACGAACC
AGGGCTCCGGCAGACTTTGAGGGAAAGAAGACGCAGTTTTGATAACGCTG
TACAAGGTCTTGGGGTCCATGGACTGACCACCGATGCCTCGGGTCAGCTT
ATTTCCCTACATGTAGCCCTGAAAACCGAGCTGCAACGCCATGTGGATAC
CTACAAGATGGCCATTCACAAGCTGGAGGAGCTGAGCATGGTGACTGTCA
ACCAAGACCCTGCTCACTCCTCCCATCAACGATTGTTGGCCATCAATTAT
GGGGATATTCAGCAGCGACTGATCGACAACAAGACCCTGCTCACAATGCT
AGACAAGCCGGCTCTCAAGCAGCTCCAAACCCTGGTCGAGAACCTCAGCA
CGCGGGTGGAGAACGACAAGGAGGTGCTCACCTGCGTGGGTCACGTGCGT
CGTCTGGACGCACAGGCGCTCGTGGAGAAACGCCCTGCCGCCGGTCTGCT
GATGAACTTCTCCCGCGGCTGCGAGGTGGTGCTCCACATGATGGGCCCTG
AAGAGGTCCTCCGGGCTCCTCCCACTCCATTGGAAAGACCACTCCCCCAG
GCGGCGCCTAGCACGAGCAGCTGCAGCGATGGATATTCACTCGGACGACT
CTGTAGCGATGACAGCAAGCGAAATGCTGTCCGCCTCTTATCCGATCTCT
ACGTCGAGAAACGGACGGACCGCCTGGAGGCATGGACGTCTTCCTGAAAT
AA
FMO11064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11498-RC | 2348 | CG11498-RC | 686..1770 | 9..1094 | 5015 | 98.1 | Plus |
| CG11498-RB | 2506 | CG11498-RB | 844..1928 | 9..1094 | 5015 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30155060..30155826 | 1017..251 | 3615 | 99.2 | Minus |
| 3R | 32079331 | 3R | 30155915..30156159 | 253..9 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:57:10 has no hits.
FMO11064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:40 Download gff for
FMO11064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 839..1913 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:18 Download gff for
FMO11064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 839..1913 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:27 Download gff for
FMO11064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11498-RB | 839..1913 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:27 Download gff for
FMO11064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30155059..30155823 | 254..1019 | 99 | <- | Minus |
| 3R | 30155915..30156164 | 1..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:18 Download gff for
FMO11064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25980781..25981545 | 254..1019 | 99 | <- | Minus |
| arm_3R | 25981637..25981886 | 1..253 | 98 | | Minus |
