Clone FMO11066 Report

Search the DGRC for FMO11066

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1308-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11066.5prime Sequence

791 bp (791 high quality bases) assembled on 2011-11-18

> FMO11066.5prime
CAATCGACATGGACAATAAGAAGGATATATACAATCTGTGGGTGCAGTAC
ACGACAAAGAATGATGAAACCCACTTCCGGCAATTTGTGGCCCGCTTCGT
GGCCATTTGGAGGAGCCAACTGCAGCTAGACTTTCAGGCGGAAAATTGCC
CGATGTGGCACGAGGTTCAGCCGGATAGTGGTCCCCACTTGGGCCGCCTC
CCGGATGAACTCCTGCCCGCCATCGGTAAATTCATCATTGTAGCCAGAGA
TGTTTGCGAAACGGAAGGGAAACTGGAGGAGCAGGCCATTGAAGAAGTAG
CCATACTCGTGGATTGTCTGGTGATCGTGTGCCGGCACTTTGATAACATA
CTGTCCATCATCAAGTATGAATACAAGCCGAATTTGATCGCCATACTCTC
CAGGGTGTTCAAACAACAAATGGAGCTGCCGCAGAGCGTGCCCGCAATAA
GCCACCTGTTTAGCAGTTTCTCGGCATTCCTGGAAGTCATGTATGATCCA
TATCTGACGTGGCGCAGCTTCGTGCGAGGCCAGTCAGCTGACTACAGTCG
TCTTTCATATAAACCCCACTCGGTTCATGTGGAAATTGTCCCCTTTATTT
ATGATTGCTTTCAGGAGGAGAAGCTCATCCGATATGCGGAAATTGGCGAA
AGCCTGCTAAACATCCTGGGCGCTGTGATTTGCGGCTCACAGGTAGCGCC
AGAAAGCGTCTCCAGTCACTTCCTGTGTAGTCCTTTCTCTCTTAAAAACC
GTTTAATTATTAACCTCACTTCCGCAAGCTTTCTAGACCAT

FMO11066.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RE 10170 CG43367-RE 293..1057 9..773 3810 99.9 Plus
CG43367-RF 9817 CG43367-RF 1..704 70..773 3505 99.9 Plus
CG43367-RD 9842 CG43367-RD 293..976 9..692 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4194555..4194914 57..416 1800 100 Plus
3L 28110227 3L 4194978..4195164 417..603 935 100 Plus
3L 28110227 3L 4195298..4195468 603..773 840 99.4 Plus
3L 28110227 3L 4194285..4194335 9..59 255 100 Plus
Blast to na_te.dros performed on 2014-11-26 23:57:29 has no hits.

FMO11066.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:42 Download gff for FMO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1308-RE 283..1066 1..781 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:27 Download gff for FMO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RE 283..1066 1..781 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:35 Download gff for FMO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RE 283..1066 1..781 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:35 Download gff for FMO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4194275..4194335 1..59 93 -> Plus
3L 4194558..4194914 60..416 100 -> Plus
3L 4194978..4195164 417..603 100 -> Plus
3L 4195299..4195477 604..781 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:27 Download gff for FMO11066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4194275..4194335 1..59 93 -> Plus
arm_3L 4194558..4194914 60..416 100 -> Plus
arm_3L 4194978..4195164 417..603 100 -> Plus
arm_3L 4195299..4195477 604..781 97   Plus