FMO11068.5prime Sequence
1116 bp (1021 high quality bases) assembled on 2011-11-18
> FMO11068.5prime
CAGTCGACATGTGCGACGTGCTCCTCCCATGCGAGTATAATCCAAAGGAA
TGTCCGAGTCCTGCGGCGGAGAAGAGCCGCCTCTTCACGATCCTTTTGCT
CTACTGTTGGCAGCGGGAGTACGATAAGAGACCCTACCGCCAGTTCCAGT
TCAAGCGACTCACGTTCGAGGAACGGATTGGTCGGAGGTACCACTGCATC
CGTGACTTGCGGATCATCGTTAACTATCTGCTGCGGCGTCCCCAGTTGTC
TGTCCAAATTTCCAGCTTGGTTGTCAGCAACTGGGATGCGGGCTTGCTGA
AGGACTTTGTCCGCTCGCTGCTCCCCGTTTGGTACATCGAGCTGCGACTG
ATGCGGTTTCCTCGGGAGTTCTTCGTGATGCTGCGTCTCAATGCGGCCAA
GATGAATGTTAGCCAGCTCAGCTTGGAAGGAACACCCCTCACCGATGAAG
ACGTGCGCATCCTGCGAGAATTCCTGCTGGTAAGCAAGACTCTGCGCAGG
CTCAACGTGTCCAGCTGCAGCCTGACACAGTTCAACTTCGCTCTGATCGC
GGACGGAGTGTATAAGTCGCCTGGAGTGCGACGCTTGAGCGCCAACCGGC
TGCTGGGGATGAGCCTCAGCCTGGACACGGAGAAAATTTCATCCGTGCTG
AGCTCGCTGCTGATGCAGAATACACTCTGGGCTCTTTCGCTGGAGCACTG
CGAACTGACCGCCCAGGACATGATTCCCATTGCCGAGCACCTGGCACGGA
CCAACTCGAAATTTCGGCGCCTGCGAATCGCCTGCAACAAGATCGGTCCG
GATGGAGCCTTCTTTCTGCTGCGTGGAATGTCCATGGGTGGCAATCTGGA
GTTGCTGGACCTGAGCTACTGCTCGATTGTACGCACGGCGGCGAGTGGTG
GCCAAGTACCTGGCTCGTGCGCAGACTGCAGTCCTGCACTTGACTACACG
ACATGGTCGACGCAGTGAATCTCATCCTTCTGCCATGAGAACAGTGCAAG
CTGAAAACTAACCTTGTATGCACCACCTTTGACCTCCGCGTACCGCGAAT
GAATAGTGCGTCGCTGGCTGATGCGAGGTAGTACTTCCCATCCGACTGAC
TTCAGTAACAATACGC
FMO11068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8197-RB | 1390 | CG8197-RB | 65..1187 | 9..1115 | 4880 | 97.1 | Plus |
| CG8197-RA | 1288 | CG8197-RA | 65..1187 | 9..1115 | 4880 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9060760..9061367 | 1020..428 | 2365 | 97.2 | Minus |
| 2R | 25286936 | 2R | 9061439..9061860 | 430..9 | 2110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:57:48 has no hits.
FMO11068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:43 Download gff for
FMO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1168 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:36 Download gff for
FMO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1168 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:43 Download gff for
FMO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1168 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:43 Download gff for
FMO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9060683..9061365 | 430..1098 | 95 | <- | Minus |
| 2R | 9061440..9061864 | 1..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:36 Download gff for
FMO11068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4948188..4948870 | 430..1098 | 95 | <- | Minus |
| arm_2R | 4948945..4949369 | 1..429 | 99 | | Minus |
