FMO11070.5prime Sequence
635 bp (635 high quality bases) assembled on 2011-11-18
> FMO11070.5prime
CAGTCGACATGGACCGGCAACAAGTTACACTGCTGAATATCCTTATATCC
CTAACATTGCAAATAATAAGCCCTTCATTTGCATTAAATCACTTTTTTAT
TCCTGAAAGGGAAGAGCTGTTTAGTGAGTGCCTCGACAAGCCAGGATTTT
CTTACGTGAATGAGTTGGCTGATCTTTCCCGATTTAACCGTAAAAAAGAT
GCAGATGGGGCCATGAATATATCTGGAAACATAACCATGTTATGGGACGT
CGAACCTTCAAATCGCGTCGCGGTTGAAGTAAACATAGAAAAATTTGAAG
GAGGTACTTGGAATCCAACATTATTCAAAGGAGGTGATAAGGATTTCTGC
AAGAACTTCTATGATAAGAACACCATTTATTATCCTTTCTCGACAAAACA
CGTAATCAACAAGCAGCAAGTTAAGGACAAATGCATTACAACTCCGGGAA
CAGTTTTAGTCCTGGAACCATTTATCCTGAAGATATTAATCAATTTCGCA
GTGCCTCTAAGCCCAGGAATTCACAAGGCTGTCATTATATTTTCTGCATT
CGACAAATCTGGTGTTAAGCGTCCACGGGACACTTGCATTGAAATTGTTG
GCGAAATAGTGAATATCGCAAGCTTTCTAGACCAT
FMO11070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB93b-RA | 680 | CG31438-RA | 3..613 | 7..617 | 3055 | 100 | Plus |
| CheB93a-RA | 751 | CG15503-RA | 206..604 | 216..614 | 360 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21409125..21409392 | 7..274 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 21409452..21409629 | 272..449 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 21409690..21409857 | 450..617 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 21407787..21407942 | 294..449 | 240 | 76.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 5962..5993 | 84..53 | 106 | 81.2 | Minus |
FMO11070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:36 Download gff for
FMO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB93b-RA | 1..612 | 9..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:52 Download gff for
FMO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB93b-RA | 2..613 | 7..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:05 Download gff for
FMO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB93b-RA | 2..613 | 7..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:05 Download gff for
FMO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21409453..21409629 | 273..449 | 100 | -> | Plus |
| 3R | 21409690..21409860 | 450..622 | 97 | -> | Plus |
| 3R | 21409118..21409390 | 1..272 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:52 Download gff for
FMO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17234840..17235112 | 1..272 | 98 | -> | Plus |
| arm_3R | 17235175..17235351 | 273..449 | 100 | -> | Plus |
| arm_3R | 17235412..17235582 | 450..622 | 97 | -> | Plus |
