Clone FMO11071 Report

Search the DGRC for FMO11071

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42847-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11071.5prime Sequence

449 bp (449 high quality bases) assembled on 2011-11-18

> FMO11071.5prime
CAGTCGACATGTCGAATTATAGGGTTACATATAAAAATCGATGCATTAGC
TGTGGCGTCGAAGTACCAGTCCTTTCCACAAATGGATGCCATTTCAAAGT
TCAGGACAAATTTAATTCTTGTGGCTCCAAAATAAGCAATCCTCGAAAAC
GGCCGAGTCAAATAAAAAGGCACAGGAATATTTCTCAAAGAAAGCTAAAT
AATGGTTTTAAATGGTCTTCATCATCTACGAAAAAACGATTCTATCCGTT
AGTAAAGAAACAAAAATTGTTGATGTCCTCAGAGCCCTCTCATAAGGCTC
TAATTTTAAGAGAGATGATTAGGTTAGGAAGAAAACCGAATCGAAAGTTC
GAAAAGGCTGCGAGAAATAGTGTATTTCCGGGCATCTGCCGTACGATATT
GAAACTGCACCAGTATACTAATCTTGTACAGGCAAGCTTTCTAGACCAT

FMO11071.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42847-RA 817 CG42847-RA 153..576 8..431 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9428022..9428396 8..382 1875 100 Plus
2L 23513712 2L 9428449..9428499 381..431 255 100 Plus
Blast to na_te.dros performed on 2014-11-26 23:56:27 has no hits.

FMO11071.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:37 Download gff for FMO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42847-RA 102..542 1..439 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:56 Download gff for FMO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42847-RA 144..584 1..439 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:08 Download gff for FMO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42847-RA 144..584 1..439 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:08 Download gff for FMO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9428013..9428395 1..381 98 -> Plus
2L 9428450..9428507 382..439 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:56 Download gff for FMO11071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9428013..9428395 1..381 98 -> Plus
arm_2L 9428450..9428507 382..439 93   Plus