FMO11074.5prime Sequence
1132 bp (1020 high quality bases) assembled on 2011-11-18
> FMO11074.5prime
CAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACTTTGGGCCA
CACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCCAACAAGGC
CAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAATGACAACTG
GTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGGCTCTGAAC
GCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGAGGCGCCAT
GTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGTAAGCCATG
GCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGAGCGGTCGG
AGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGCGGAATCGA
GACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTATACCCTGC
TGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCACCCTCTGG
ATACTCAAGGAGGGCATGGGGCAGCTTAAAATCGTACCCGGTGGCATACA
GCTGTCCGGACAAGCGATAATTATGGACATGCTGCGCGCCTCCACAATCC
GTTCGCGGCACGGTCAACCCATTTCCATAGAGTCATCACGTAACTTTTCA
ATCAATACACGTGATCCGAATGGCATGATTGAGAATCATTTATTCCTGGG
ACACGATAAGTTCGAGTGCCTGTCGGCGGGATTTCGCATAAACGACACCA
ACGGACGCAGCCTGTTCTCCGTGAACCGAGATGAAGTCACCATCGGAGCA
CATGCCCTGCGGATCGACGGCGAAGTGGCGCCGTCTTCCGGGAATCCGTG
CAGACGCCCCATGTGCGGGCCGAGCCCGGCCGGGAGCTGAGACTCGAATC
GCCCACACGCCAATTGGAGATGACGGCGGCCAAGGACATCAATTTGCATC
GCGGGCAGAAGCATAGAAGTCGTGCCCTGGAAGACGTCAAGTTCCGAGCC
TCGATGGGGAGCTGGCGCCTGAAGTCTCAAGAATACTAATGCCCAACTGG
CGAACGGCCAGCGCCATTCTGGCCACTGCCCAAGCCAGATCCAATGCACC
GGTCTTCAGGTGGCAGTTCATGCAAGCTTCCT
FMO11074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1549 | 9..1107 | 4810 | 95.9 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1736 | 9..1107 | 4810 | 95.9 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1543 | 9..1107 | 4810 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749912..1750413 | 510..9 | 2510 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 891..622 | 1275 | 98.9 | Minus |
| X | 23542271 | X | 1749697..1749819 | 630..508 | 615 | 100 | Minus |
| X | 23542271 | X | 1746699..1746812 | 1000..890 | 405 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:54 has no hits.
FMO11074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:52 Download gff for
FMO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RD | 602..1109 | 1..509 | 99 | -- | Plus |
| Scgdelta-RD | 1127..1622 | 510..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:35 Download gff for
FMO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 415..922 | 1..509 | 99 | -- | Plus |
| Scgdelta-RA | 940..1435 | 510..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:32 Download gff for
FMO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 409..916 | 1..509 | 99 | -- | Plus |
| Scgdelta-RC | 934..1429 | 510..1000 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:32 Download gff for
FMO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1746699..1746810 | 892..1000 | 96 | <- | Minus |
| X | 1748032..1748293 | 631..891 | 99 | <- | Minus |
| X | 1749697..1749817 | 510..630 | 100 | <- | Minus |
| X | 1749913..1750417 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:35 Download gff for
FMO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1640732..1640843 | 892..1000 | 96 | <- | Minus |
| arm_X | 1642065..1642326 | 631..891 | 99 | <- | Minus |
| arm_X | 1643730..1643850 | 510..630 | 100 | <- | Minus |
| arm_X | 1643946..1644450 | 1..509 | 99 | | Minus |
