Clone FMO11075 Report

Search the DGRC for FMO11075

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42853-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11075.5prime Sequence

878 bp (878 high quality bases) assembled on 2011-11-18

> FMO11075.5prime
CAGTCGACATGGCCACAAGCGCGAACTCTGTTCAAGTTTCTGGAGCCGGT
GCGGAGGTAAACGAAGCTAAACTCATCTGCATCTGGGAGGGAATAACTGA
GCTGATCCTGTGGCGCAACTGGATAAAGTCGATGCTTGTATTCGTAATGC
TACAGACCATAATTTATGATCTGCTTTCTGAACCGCTTGTGTTCGTGGTG
AGCGTATGGGCTTTGATTATCATGGTCATATCAATGGGGTACCGTTTTTT
GGTACAGTACACTAATACCCATATCCAGAACAACAGCTATCCGAAATATC
TTGACATAGACCTAAGAATCTCCCAGGAGTTATCTAAGCAACTGGGTGTT
CTAGTTTCAACCAAAGTTGTTGCGTTTCTAAATAATCTACGAGAGATATT
ACTAGTAAAGAGCTTTTCGAAATCATTCAAGTGGTTTGGCCTTCTCCTAA
TAATTAGCAAACTTGGAAAGCAGATTAACTTTCTAATTGTTGGCCAATTA
GGGCTGTTTCTACTCTTCACAATTCCCAAAATGTGTGAGATGAATAGACG
TTCATCAAATATTGTACAACTTCCTAAATTTAATAAACAATATCAAATTA
CCAAAGTAAACGCTTCGACCGAAACCCAGAATGCATTGGACATGGAATCC
TTAAAAGAGTGCAACGAGGACACCATAAAGCTAATTGAAAAGCAACCAGA
AGGGATGGATCTCTCACTCGGCTGTGATATTACCAAGGAATCCCAGAATG
CGGCTGATGATCTTAAAGCCTTTAAAGTAAAGGAGGAAATAGACATTGAT
GCTTTTGAGCGACTTGCCGATTCCTGGTCCGACGAAGATACACTTACTGA
TCAAAAAAATGCAAGCTTTCTAGACCAT

FMO11075.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42853-RA 1001 CG42853-RA 63..914 9..860 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18121434..18121927 502..9 2470 100 Minus
3L 28110227 3L 18121019..18121379 860..500 1805 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:00:04 has no hits.

FMO11075.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:53 Download gff for FMO11075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42853-RA 63..919 9..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:39 Download gff for FMO11075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42853-RA 63..919 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:36 Download gff for FMO11075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42853-RA 63..919 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:36 Download gff for FMO11075.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18121014..18121377 502..868 98 <- Minus
3L 18121435..18121927 9..501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:39 Download gff for FMO11075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18114114..18114477 502..868 98 <- Minus
arm_3L 18114535..18115027 9..501 100   Minus