Clone FMO11076 Report

Search the DGRC for FMO11076

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43050-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11076.5prime Sequence

542 bp (542 high quality bases) assembled on 2011-11-18

> FMO11076.5prime
CAGTCGACATGCCACACGTGAGATTTGGCTACAATGGAAAGCCAGGAGCA
CCAAGAACGGGTATGATAACCGCACTTGAGGTAAAGAAATGCCTCAATAT
AACAATCCTAAAAAATTTGAATAAAAAAAAGTTATTGGGTGTTTGGTTTG
CATACGCAACAACACCTGTCAATATACCCGCCTACAAACGTCGTTGTTCA
TCGTATAATGTTCAGGATAGTACCTTTTTCGATACCCATATCGTGTATAC
GGACTACAAGCACGTGACTGTCACCTATGACTGCAAGTACAACGATATGA
CCATGCTGCATGACCTTAAAGTCCGCGTTTTAACACGCACTCGAACCCCT
GTGCTCAAAGATTTAAACCAGGCCTTATACTTTCTAGAGGAACATGCATT
TTCAATCAAAAACTTGGATTTCCTCAAGTCAAAAGCATTCTGCTTTGAGT
GGTACGTGTTGAAATACCACTCCAAAACACGACCGGGTCGATTCAATGCG
CCCATCATCCGGGTTTGGGATCATGCAAGCTTTCTAGACCAT

FMO11076.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-RA 1119 CG43050-RA 198..718 3..524 2585 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13120158..13120366 316..524 1045 100 Plus
2L 23513712 2L 13119996..13120092 223..319 470 99 Plus
2L 23513712 2L 13119843..13119935 130..222 465 100 Plus
2L 23513712 2L 13119696..13119783 44..131 440 100 Plus
2L 23513712 2L 13119496..13119533 9..46 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:00:14 has no hits.

FMO11076.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:54 Download gff for FMO11076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 196..718 1..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:45 Download gff for FMO11076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 196..718 1..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:41 Download gff for FMO11076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 196..718 1..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:41 Download gff for FMO11076.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13120158..13120366 316..524 100   Plus
2L 13119489..13119532 1..45 93 -> Plus
2L 13119698..13119783 46..131 100 -> Plus
2L 13119845..13119935 132..222 100 -> Plus
2L 13119996..13120088 223..315 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:45 Download gff for FMO11076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13119489..13119532 1..45 93 -> Plus
arm_2L 13119698..13119783 46..131 100 -> Plus
arm_2L 13119845..13119935 132..222 100 -> Plus
arm_2L 13119996..13120088 223..315 100 -> Plus
arm_2L 13120158..13120366 316..524 100   Plus