FMO11078.5prime Sequence
1141 bp (1027 high quality bases) assembled on 2011-11-18
> FMO11078.5prime
CAGTCGACATGACGTATCTTTTTGTGTGGATTTTTTTGTGCTCATTGGGA
TCTTGCCAGTTGGCGTATTCCATGTTTTTGAAGCAGCCCTGTGGAAAAAC
ACCAGTCCCGAAAATTATTTCAGGCTCAAACGCAAGTCAACAAAGTGCTC
AGTATATGGCAGGCATTTTTAATACAACACATTTGTTGTGCGGCGGCACG
ATTATTCACGAAGATTTTGTTTTAACGGTTGCTCATTGCAAAAGTACACA
AACGCTATTCGTGAGACTTGGAGCGTACAACATTAATCACCCGACCGATC
AGATTCGCGTAATCGAAACTATAGCCCATCCACAATACAGCAATTCCACT
TATGCCAACGATATAGCCCTGGTGAAGTTGGAGAGGAGTGTGATATTTAA
CCTTAATATTCAACCAATATGCATTCACTTGGACGCAACATTGGGCAAAC
AAATACGCTATTATAATGCCTTTGGATGGGGAAGAACAAGAAATGCCGAG
CAAAGCGATATACTTCAAAGAATTTTTGTTAATCGAACCAACCCAATGAT
ATGCCATCTCTATTTGGGAATGAGTCCCGATCCGAAACAGATATGTGCGA
CTACCGACCAAGGAGATACATGTGCCGGCGATTCTGGCGGTCCGTTGATC
AGCAAAATTACTTACCAGGGGAAGAATTTCGATACACAGTTCGGGATTAC
CAGTTATGGCACCAGGGAATGCAATGGAGTTGGTCTCTATACCGATGTCT
CACAGTATAGTGGCTGGATTGCAAATATAGTTAGGAGCAAACAGGATCGT
AGTGTGGTCAGTAGAGGAGCAACGGTATGTTTCTGTATTCTGACTGCACT
GGCGATTCCATCGGATCCATTCTAATGGCAACCATCGTTGGACTTCAATA
CTCCGCGAAGGTGTACTGATCACCGACGCCATGTCCTAACCACTGCGGAC
TTTTCCCAGACACCCCTTCTTCTTAGCCATTGTTGGTGATGGGTATGAAT
TCAGCTAGCGCGATTTTAGCCGGTTGCGAACATTAACATATCACTGATTA
GCCTGACCGTTCGTTGGAAAAATAGTGCATTGGTAACGAATCTGCATTCT
GAACTGCAACTCCCTGTTCTTTAGATATGGCCAGTCAATAT
FMO11078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43110-RA | 1671 | CG43110-RA | 24..1140 | 6..1109 | 5065 | 97.7 | Plus |
CG43110-RB | 8272 | CG43110-RB | 2192..3308 | 6..1109 | 5065 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17482907..17483433 | 927..403 | 2535 | 99.6 | Minus |
2R | 25286936 | 2R | 17483822..17484029 | 213..6 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 17483492..17483637 | 402..257 | 730 | 100 | Minus |
2R | 25286936 | 2R | 17483698..17483742 | 256..212 | 225 | 100 | Minus |
2R | 25286936 | 2R | 17482639..17482695 | 1057..1003 | 190 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:00:32 has no hits.
FMO11078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:55 Download gff for
FMO11078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43110-RA | 1..1123 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:54 Download gff for
FMO11078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43110-RA | 18..1149 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:49 Download gff for
FMO11078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43110-RB | 2186..3317 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:49 Download gff for
FMO11078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17482791..17482839 | 928..974 | 93 | <- | Minus |
2R | 17482906..17483433 | 403..927 | 99 | <- | Minus |
2R | 17483492..17483637 | 257..402 | 100 | <- | Minus |
2R | 17483698..17483740 | 214..256 | 100 | <- | Minus |
2R | 17483822..17484031 | 1..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:54 Download gff for
FMO11078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13370296..13370344 | 928..974 | 93 | <- | Minus |
arm_2R | 13370411..13370938 | 403..927 | 99 | <- | Minus |
arm_2R | 13370997..13371142 | 257..402 | 100 | <- | Minus |
arm_2R | 13371203..13371245 | 214..256 | 100 | <- | Minus |
arm_2R | 13371327..13371536 | 1..213 | 98 | | Minus |