Clone FMO11078 Report

Search the DGRC for FMO11078

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43110-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11078.5prime Sequence

1141 bp (1027 high quality bases) assembled on 2011-11-18

> FMO11078.5prime
CAGTCGACATGACGTATCTTTTTGTGTGGATTTTTTTGTGCTCATTGGGA
TCTTGCCAGTTGGCGTATTCCATGTTTTTGAAGCAGCCCTGTGGAAAAAC
ACCAGTCCCGAAAATTATTTCAGGCTCAAACGCAAGTCAACAAAGTGCTC
AGTATATGGCAGGCATTTTTAATACAACACATTTGTTGTGCGGCGGCACG
ATTATTCACGAAGATTTTGTTTTAACGGTTGCTCATTGCAAAAGTACACA
AACGCTATTCGTGAGACTTGGAGCGTACAACATTAATCACCCGACCGATC
AGATTCGCGTAATCGAAACTATAGCCCATCCACAATACAGCAATTCCACT
TATGCCAACGATATAGCCCTGGTGAAGTTGGAGAGGAGTGTGATATTTAA
CCTTAATATTCAACCAATATGCATTCACTTGGACGCAACATTGGGCAAAC
AAATACGCTATTATAATGCCTTTGGATGGGGAAGAACAAGAAATGCCGAG
CAAAGCGATATACTTCAAAGAATTTTTGTTAATCGAACCAACCCAATGAT
ATGCCATCTCTATTTGGGAATGAGTCCCGATCCGAAACAGATATGTGCGA
CTACCGACCAAGGAGATACATGTGCCGGCGATTCTGGCGGTCCGTTGATC
AGCAAAATTACTTACCAGGGGAAGAATTTCGATACACAGTTCGGGATTAC
CAGTTATGGCACCAGGGAATGCAATGGAGTTGGTCTCTATACCGATGTCT
CACAGTATAGTGGCTGGATTGCAAATATAGTTAGGAGCAAACAGGATCGT
AGTGTGGTCAGTAGAGGAGCAACGGTATGTTTCTGTATTCTGACTGCACT
GGCGATTCCATCGGATCCATTCTAATGGCAACCATCGTTGGACTTCAATA
CTCCGCGAAGGTGTACTGATCACCGACGCCATGTCCTAACCACTGCGGAC
TTTTCCCAGACACCCCTTCTTCTTAGCCATTGTTGGTGATGGGTATGAAT
TCAGCTAGCGCGATTTTAGCCGGTTGCGAACATTAACATATCACTGATTA
GCCTGACCGTTCGTTGGAAAAATAGTGCATTGGTAACGAATCTGCATTCT
GAACTGCAACTCCCTGTTCTTTAGATATGGCCAGTCAATAT

FMO11078.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG43110-RA 1671 CG43110-RA 24..1140 6..1109 5065 97.7 Plus
CG43110-RB 8272 CG43110-RB 2192..3308 6..1109 5065 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17482907..17483433 927..403 2535 99.6 Minus
2R 25286936 2R 17483822..17484029 213..6 1040 100 Minus
2R 25286936 2R 17483492..17483637 402..257 730 100 Minus
2R 25286936 2R 17483698..17483742 256..212 225 100 Minus
2R 25286936 2R 17482639..17482695 1057..1003 190 93 Minus
Blast to na_te.dros performed on 2014-11-27 00:00:32 has no hits.

FMO11078.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:55 Download gff for FMO11078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43110-RA 1..1123 9..1116 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:54 Download gff for FMO11078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43110-RA 18..1149 1..1116 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:49 Download gff for FMO11078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43110-RB 2186..3317 1..1116 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:49 Download gff for FMO11078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17482791..17482839 928..974 93 <- Minus
2R 17482906..17483433 403..927 99 <- Minus
2R 17483492..17483637 257..402 100 <- Minus
2R 17483698..17483740 214..256 100 <- Minus
2R 17483822..17484031 1..213 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:54 Download gff for FMO11078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13370296..13370344 928..974 93 <- Minus
arm_2R 13370411..13370938 403..927 99 <- Minus
arm_2R 13370997..13371142 257..402 100 <- Minus
arm_2R 13371203..13371245 214..256 100 <- Minus
arm_2R 13371327..13371536 1..213 98   Minus