FMO11079.5prime Sequence
961 bp (961 high quality bases) assembled on 2011-11-18
> FMO11079.5prime
CAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCAATGAGAGC
CCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCCCTGAAGGG
CTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCGTCCCTACA
GCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACGAGCCCGCC
ACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTGCCAGTGAG
CCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCATCACTACA
GCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGAATGATCAT
CTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCT
CTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGT
ACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTCGTCGCTCG
GCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGCGAGCCGTA
CGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCCACGCGGAG
GACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCACGCGGCCC
AGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTTGAACGACT
CCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCAGCC
CCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGTGGGACGTG
GATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCCTCGAGCCC
CGTGGCCCGGGATTCGTACTTGTCGCCGGTGAGAACCGCTACTTGTGGTC
CAAGCACCCAGCTAGACCCTTGACACCTGAGAGAGATTTATTCGCAGCTT
TCTAAGACCAT
FMO11079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RJ | 1954 | CG6803-RJ | 115..1053 | 9..943 | 4605 | 99.6 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1119 | 9..943 | 4605 | 99.6 | Plus |
| Mf-RD | 1783 | CG6803-RD | 115..1035 | 9..928 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15172600..15172830 | 926..697 | 1105 | 99.6 | Minus |
| 3R | 32079331 | 3R | 15178280..15178490 | 309..99 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 697..489 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 489..378 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 100..9 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 381..306 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:00:41 has no hits.
FMO11079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:56 Download gff for
FMO11079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RJ | 107..1053 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:58 Download gff for
FMO11079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RF | 173..1119 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:53 Download gff for
FMO11079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RF | 173..1119 | 1..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:53 Download gff for
FMO11079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15172586..15172830 | 697..938 | 97 | <- | Minus |
| 3R | 15174137..15174343 | 490..696 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 380..489 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 310..379 | 100 | <- | Minus |
| 3R | 15178280..15178489 | 100..309 | 100 | <- | Minus |
| 3R | 15179039..15179135 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:58 Download gff for
FMO11079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11004002..11004211 | 100..309 | 100 | <- | Minus |
| arm_3R | 10998308..10998552 | 697..938 | 97 | <- | Minus |
| arm_3R | 10999859..11000065 | 490..696 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 380..489 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 310..379 | 100 | <- | Minus |
| arm_3R | 11004761..11004857 | 1..99 | 95 | | Minus |
