FMO11080.5prime Sequence
584 bp (584 high quality bases) assembled on 2011-11-18
> FMO11080.5prime
CAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACGAGACGAAA
AACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGATAATCAGAT
AGATGTGGACAACCTGCCACCACTGGAGGTGGGTCCCGGCGAGAACCGGC
TGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGCAGCGCGCG
GCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGCGCCAGCGT
GCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCACCGCCCTGA
AGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATACCGATGTGG
GAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGACTACGCAA
GAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGATGCTCGGGG
AGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTACAGACGAAA
TATCCGATAAAAACCGAACACAGCCGGCCAATGCATACAAATGAGCGAAG
GAGCGATGGAGTCACGGCAAGCTTTCTAGACCAT
FMO11080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4EHP-RC | 4539 | CG33100-RC | 454..1011 | 9..566 | 2790 | 100 | Plus |
| 4EHP-RB | 2401 | CG33100-RB | 454..952 | 9..507 | 2495 | 100 | Plus |
| 4EHP-RD | 1324 | CG33100-RD | 454..951 | 9..506 | 2490 | 100 | Plus |
| 4EHP-RB | 2401 | CG33100-RB | 1702..1762 | 506..566 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24106825..24107284 | 506..47 | 2300 | 100 | Minus |
| 3R | 32079331 | 3R | 24068005..24068065 | 566..506 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 24108469..24108507 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:00:49 has no hits.
FMO11080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:57 Download gff for
FMO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4EHP-RC | 410..975 | 1..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:03 Download gff for
FMO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4EHP-RC | 450..1015 | 1..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:57 Download gff for
FMO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4EHP-RC | 450..1015 | 1..572 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:57 Download gff for
FMO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24068001..24068064 | 507..572 | 95 | <- | Minus |
| 3R | 24106825..24107284 | 47..506 | 100 | <- | Minus |
| 3R | 24108470..24108511 | 1..46 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:03 Download gff for
FMO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19893723..19893786 | 507..572 | 95 | <- | Minus |
| arm_3R | 19932547..19933006 | 47..506 | 100 | <- | Minus |
| arm_3R | 19934192..19934233 | 1..46 | 91 | | Minus |
