Clone FMO11081 Report

Search the DGRC for FMO11081

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:81
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42660-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11081.5prime Sequence

452 bp (452 high quality bases) assembled on 2011-11-18

> FMO11081.5prime
CAGTCGACATGTGCATTTGCTCAACTCGTGTACTCAAAATCGTTCTTTTG
GCATTCATACATCTTGCCGCAGGATTTAATGGCGCGCAAATAGCGAAGGA
CATTACTTTGCTGGATAAACTGGTGGGTCACCATCATGTTATGCTTACTA
TAAGTCTAGCACTATGTGTTATCATACTAGTTGTTCTCTTAGTTGCCATT
TTTGCTGCTATTCGTCATCATATATTGGCTTTAAACGTGACGCTTGTTTT
CTTGATTTTTAAGTGTGTAGCAAAGGGTATTATCGTAATCGTTTGCGTAT
TAACCGCAGAAACAGGTATTGAAAATACTGCCGCACATTTTTGGTTCTTT
CTATGCTGGAAATTCACGTGTTGCTGTATGCTCTTTAATCTATTCTTTTA
TATACGGCTAACAGAGAATTCAAGACAAGCTGACGCAAGCTTTCTAGACC
AT

FMO11081.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42661-RB 2597 CG42661-RB 44..469 9..434 2130 100 Plus
CG42661-RA 2531 CG42661-RA 44..469 9..434 2130 100 Plus
CG42660-RB 2597 CG42660-RB 44..469 9..434 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7465670..7465837 72..239 840 100 Plus
3L 28110227 3L 7465900..7466029 239..368 650 100 Plus
3L 28110227 3L 7466086..7466152 368..434 335 100 Plus
3L 28110227 3L 7465552..7465615 9..72 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:00:59 has no hits.

FMO11081.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:58 Download gff for FMO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66A-RD 44..474 9..442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:07 Download gff for FMO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42660-RA 44..474 9..442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:02 Download gff for FMO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42660-RB 44..474 9..442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:02 Download gff for FMO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7465552..7465614 9..71 100 -> Plus
3L 7465670..7465837 72..239 100 -> Plus
3L 7465901..7466029 240..368 100 -> Plus
3L 7466087..7466157 369..442 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:07 Download gff for FMO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7458652..7458714 9..71 100 -> Plus
arm_3L 7458770..7458937 72..239 100 -> Plus
arm_3L 7459001..7459129 240..368 100 -> Plus
arm_3L 7459187..7459257 369..442 94   Plus