FMO11082.5prime Sequence
485 bp (485 high quality bases) assembled on 2011-11-18
> FMO11082.5prime
CAGTCGACATGGCAGTCGAGGAATTAGAGAGCAAAATTGTCCAACTGTTC
GTAGAGAACCCCCTCCTGCGCTACGGTGCTGTTGGTCTGTGCGCCATCTA
CCTGATCTTTGGCTGGGGCGCCCAACTACTGTGCAACATCATTGGGGTTC
TGTACCCTGCATATATTTCCATCCATGCCATCGAGTCCAGCACAAAGCAG
GACGACACCAAGTGGCTGATCTACTGGGTCACGTTTGGAATCTTCACCGT
GATTGAATTCTTTTCGAGTCTGCTAACTTCGGTGATTCCCTTTTACTGGC
TGCTGAAGTGTGCTTTCCTCATCTGGTGCATGCTGCCCACGGAACAGAAT
GGTTCTACCATCATCTACAACAAGCTGGTGCGACCCTACTTCCTGAAACA
TCACGAATCCGTTGACAGGATCATCGATGATGGCATGAAGAAAGCCGCTG
GAGTGCTGAAGCATGACGCAAGCTTTCTAGACCAT
FMO11082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8331-RC | 1023 | CG8331-RC | 370..830 | 7..467 | 2305 | 100 | Plus |
| CG8331-RD | 846 | CG8331-RD | 261..653 | 75..467 | 1965 | 100 | Plus |
| CG8331-RB | 877 | CG8331-RB | 292..684 | 75..467 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14172289..14172522 | 75..308 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 25786726..25787057 | 421..90 | 1090 | 88.6 | Minus |
| 2R | 25286936 | 2R | 14172582..14172683 | 307..408 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 14172158..14172228 | 7..77 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 14172747..14172805 | 409..467 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:01:04 has no hits.
FMO11082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:58 Download gff for
FMO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 1..466 | 3..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:09 Download gff for
FMO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 362..830 | 1..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:04 Download gff for
FMO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 362..830 | 1..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:04 Download gff for
FMO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14172150..14172226 | 1..75 | 94 | -> | Plus |
| 2R | 14172290..14172522 | 76..308 | 100 | -> | Plus |
| 2R | 14172584..14172683 | 309..408 | 100 | -> | Plus |
| 2R | 14172747..14172805 | 409..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:09 Download gff for
FMO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10059655..10059731 | 1..75 | 94 | -> | Plus |
| arm_2R | 10059795..10060027 | 76..308 | 100 | -> | Plus |
| arm_2R | 10060089..10060188 | 309..408 | 100 | -> | Plus |
| arm_2R | 10060252..10060310 | 409..467 | 100 | | Plus |
