Clone FMO11083 Report

Search the DGRC for FMO11083

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:83
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43093-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11083.5prime Sequence

389 bp (389 high quality bases) assembled on 2011-11-18

> FMO11083.5prime
CAGTCGACATGCAGCTGAGTATTATAGTATTGCTCTTGTGCTCGGTGGTT
GTTGCAAATTCACTTGCCCCAAGTCAACTGGCATCGAAAACCCCATCACC
CAATGTAAGCAAGGATCAGCCGTCATCCAGGGAGGAGAAACCCAGTTTGA
AACCGTGCAAACCCATCGAGACTGTGAGTTCAGAGCCAAAAGGACTAGGC
AATACTCCTAAAGTCGGTTCAATTACTCCGGAATCAGCTAAAACGTCTGG
CACAACCGTGGATAAAAGTCTGGATGATTGCGAACCCATTCCCGAGGGTA
TTGGATCTCGATTGAATGCGAGAACTCTTCAAACACTGGTTATAAAAAAT
AATAATAACCCTCTTTTTAATGCAAGCTTTCTAGACCAT

FMO11083.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43093-RA 476 CG43093-RA 4..366 9..371 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22769885..22770235 371..21 1755 100 Minus
Blast to na_te.dros performed 2014-11-27 00:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 5929..5965 321..357 113 78.4 Plus

FMO11083.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:59 Download gff for FMO11083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 2..366 7..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:12 Download gff for FMO11083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 2..366 7..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:07 Download gff for FMO11083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43093-RA 2..366 7..371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:07 Download gff for FMO11083.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22769885..22770235 21..371 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:12 Download gff for FMO11083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18595607..18595957 21..371 100 <- Minus