Clone FMO11084 Report

Search the DGRC for FMO11084

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:84
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdlg1-RO
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11084.5prime Sequence

644 bp (644 high quality bases) assembled on 2011-11-18

> FMO11084.5prime
CAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTCTCGAGCTG
CTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGGGCGCTGCG
TATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTTGTTTCAAG
CGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGGATGACTCG
AAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCAACCAAATG
GGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCGCATGCGCA
TCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGCAGCAGCAA
AAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAGCAGCAGAA
TCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCAGACTATAC
AGATACAGTCACTTACACAGACATACCCAAACGCACACCAGCGCAAGCGA
GTCCTCGTGAGCCTCCATCCACATCAACATCAACATCAAAGCCAAATTCA
ACACCAACACCATTACCAACTTCGCCATAACAACGGCATTCAAGCCAAAA
TGCTTAAGCGCGCTTTTGAGTCCACCGCAAGCTTTCTAGACCAT

FMO11084.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
dlg1-RO 2363 CG1725-RO 626..1243 9..626 3090 100 Plus
dlg1-RI 2114 CG1725-RI 371..994 9..626 3020 99 Plus
dlg1-RJ 2102 CG1725-RJ 359..982 9..626 3020 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11387992..11388171 447..626 900 100 Plus
X 23542271 X 11387772..11387933 285..446 810 100 Plus
X 23542271 X 11376840..11376973 26..159 670 100 Plus
X 23542271 X 11381854..11381980 158..284 635 100 Plus
Blast to na_te.dros performed 2014-11-27 00:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2538 340..570 237 60 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 549..634 516..600 130 62.8 Plus
rover 7318 rover ROVER 7318bp 1930..1997 531..598 123 68.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2371..2410 439..481 107 81.4 Plus
TART-C 11124 TART-C TARTC 11124bp 1615..1654 439..481 107 81.4 Plus

FMO11084.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:01:00 Download gff for FMO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
dlg1-RO 592..1221 1..635 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:17 Download gff for FMO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
dlg1-RO 620..1249 1..635 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:11 Download gff for FMO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
dlg1-RO 620..1249 1..635 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:11 Download gff for FMO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11376842..11376973 28..159 100 -> Plus
X 11381856..11381980 160..284 100 -> Plus
X 11387772..11387933 285..446 100 -> Plus
X 11387992..11388177 447..635 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:17 Download gff for FMO11084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11282025..11282210 447..635 97   Plus
arm_X 11270875..11271006 28..159 100 -> Plus
arm_X 11275889..11276013 160..284 100 -> Plus
arm_X 11281805..11281966 285..446 100 -> Plus