Clone FMO11089 Report

Search the DGRC for FMO11089

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:89
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmex1-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11089.5prime Sequence

275 bp (275 high quality bases) assembled on 2011-11-18

> FMO11089.5prime
CAGTCGACATGTGCAACGCCATTTGTGAATGCCTTAAATGTCCTGGCAAA
GTTATTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTGAGCATCGT
GTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGTCTACTTCA
CGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGAAGCAGGTC
GCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTACTTCAACAA
GGAGTACGCAAGCTTTCTAGACCAT

FMO11089.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
mex1-RB 741 CG7936-RB 83..332 8..257 1250 100 Plus
mex1-RC 1034 CG7936-RC 425..674 8..257 1145 97.2 Plus
mex1-RA 710 CG7936-RA 101..350 8..257 1145 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15517833..15518034 257..56 995 99.5 Minus
3L 28110227 3L 15519457..15519510 61..8 270 100 Minus
Blast to na_te.dros performed 2014-11-26 23:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6820 130..56 111 62.7 Minus

FMO11089.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:48 Download gff for FMO11089.5prime
Subject Subject Range Query Range Percent Splice Strand
mex1-RB 77..338 1..264 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:11 Download gff for FMO11089.5prime
Subject Subject Range Query Range Percent Splice Strand
mex1-RB 77..338 1..264 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:11 Download gff for FMO11089.5prime
Subject Subject Range Query Range Percent Splice Strand
mex1-RB 77..338 1..264 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:11 Download gff for FMO11089.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15517827..15518028 62..264 98 <- Minus
3L 15519457..15519513 1..61 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:11 Download gff for FMO11089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15510927..15511128 62..264 98 <- Minus
arm_3L 15512557..15512613 1..61 93   Minus