FMO11090.5prime Sequence
533 bp (533 high quality bases) assembled on 2011-11-18
> FMO11090.5prime
CAGTCGACATGAAGTTTATGGCAATATGCCTATTGGCAAATATTGGCTAC
ATACTTGGCACTACAATTGGCCAGCTTAATGACGAAGCCACAATTCGACT
AAAGGGACTTGTGGAGAAATATAAACTGCAAGCTCTTAGCAATCCCGAAT
TCTCTCAGTGGATTGGCAAACTTGAGAAAACTAGCAAGTCGAGAAGATTG
GAAGACAAAATGAAGGTCAAAGCTGAATTTAAAAACTACGACGAACGTCG
CTTGCAATTGGAAAATAAAATTAGGGAACGCATTACGGCGATCGATGACC
TCATATCCGATATTATGGCCAAAGTCCCGATAAAGGATAAAGGGTGTCTC
AAGTATTACCAACGCCAGAAAAGATCCCTTAAATTGGCCCACAATTTTTC
GAATTTAACTAAGCAAACAAACCTCATACGCAACTCGAAACAATGCGAAA
CAACTAAAGTGCAGTCTAGTGAACTAAGTGAAAGCTCTGAAAATCCGGAT
GAGTATAGTTATTACGCAAGCTTTCTAGACCAT
FMO11090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp38D-RB | 1234 | CG3-RB | 24..530 | 9..515 | 2535 | 100 | Plus |
| Sfp38D-RA | 640 | CG42606-RA | 24..530 | 9..515 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20641049..20641512 | 52..515 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 20640940..20640982 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 2095..2186 | 435..525 | 115 | 59.8 | Plus |
| Bari1 | 1728 | Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). | 209..331 | 515..392 | 112 | 60.9 | Minus |
FMO11090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:49 Download gff for
FMO11090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:15 Download gff for
FMO11090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:13 Download gff for
FMO11090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:13 Download gff for
FMO11090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20640932..20640982 | 1..51 | 92 | -> | Plus |
| 2L | 20641049..20641519 | 52..520 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:15 Download gff for
FMO11090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20640932..20640982 | 1..51 | 92 | -> | Plus |
| arm_2L | 20641049..20641519 | 52..520 | 98 | -> | Plus |
