FMO11094.5prime Sequence
437 bp (437 high quality bases) assembled on 2011-11-18
> FMO11094.5prime
CAGTCGACATGTGCTGCAATGCCAACCGCCAGCTATTATGTATCTTTACC
GGAGCATTGGCGATACTGATATCAACTTTATGTTTAGGATTCATGCTTTA
CCGGCTAGGCACGACTGGTATAAACCATTGGGAGGAGGCGTACCTGGTAG
CCTGGGCTGTCATTATTTTAGCAGCGGTACCTCTAATTGTAGGAGCAATA
AAAGAAATTCGCTATCTTTTGGTGATTTGGATAGTAGTCGCTTTAATAAG
CGGCATTTCTCTGATAGTTATTCAAATAGAAATGTTTCATAGCTTTTTTC
ATAAGGATCCTGATACAGCCTTTCATATTCTCGGTGGTATAGTCATTATA
GTTTTCGTATTATTGCTCTGCTGTTTTCTATACTTCCCATATACGTATGC
GCGTGAGCTGGAAGGAGATGCAAGCTTTCTAGACCAT
FMO11094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43195-RA | 1281 | CG43195-RA | 198..608 | 9..419 | 2055 | 100 | Plus |
| CG42690-RB | 1286 | CG42690-RB | 198..608 | 9..419 | 2055 | 100 | Plus |
| CG42690-RA | 761 | CG42690-RA | 198..608 | 9..419 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19945230..19945386 | 360..204 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 19945580..19945680 | 109..9 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 19945438..19945536 | 204..106 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 19945111..19945169 | 419..361 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 2896..2975 | 410..327 | 105 | 60.7 | Minus |
FMO11094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:01:00 Download gff for
FMO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 1..423 | 1..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:22 Download gff for
FMO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 1..423 | 1..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:12 Download gff for
FMO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 189..611 | 1..423 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:12 Download gff for
FMO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19945108..19945169 | 361..423 | 96 | <- | Minus |
| 2R | 19945230..19945386 | 204..360 | 100 | <- | Minus |
| 2R | 19945439..19945533 | 109..203 | 100 | <- | Minus |
| 2R | 19945581..19945686 | 1..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:22 Download gff for
FMO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15832613..15832674 | 361..423 | 96 | <- | Minus |
| arm_2R | 15832735..15832891 | 204..360 | 100 | <- | Minus |
| arm_2R | 15832944..15833038 | 109..203 | 100 | <- | Minus |
| arm_2R | 15833086..15833191 | 1..108 | 96 | | Minus |
