FMO11096.5prime Sequence
676 bp (-77 high quality bases) assembled on 2011-11-18
> FMO11096.5prime
AAATAAAGGTATCAGTCGACATGTCTGGAGCGGAGTCCCTTTTCACTTGG
GTGTACGGACCGGGTGTCACGCGAGGGGGCAGTGTGGTGGGGCATCATCA
GCCCGAGGCCCTGCGACCCGTGCTCTTTCTGTTCTATACCCTGGAAACCA
TCTTCAACATGTTCTGCATGGGATATCACATCTCGGGCTTTCAGGCCATC
GAATTGCATGTGTTCGAATGGGATACGAGCGTCAATATATGCACAGGTAA
CACACCCGCCGTCGTCACGGAGATCTGGAAGTCCTCGGCGGCAGCCATCG
TCTTTATCCTGATATCCTTGAGCACAATGTGGGACGCGGAGCGGCAGTTT
TACGTGTTCTTTTTTGCGAGCGAGCTTGGCGATAATAATTCACATGCATT
TGTGGAAGACCGCCCAATACACCCGATCTTCCACTACCTTCGTGGTATGT
CCATCTCCTCGCTGACCTGCGGAATACTCTACCTGCTGCACGCCACTATC
ATGATCGACGTCAAGCTTACCAATGACCGGAACCAAGGAGAGAGCAAGGG
TACCTATATGCCCATACCTCTTTTCGTCCTGCGGCGATTCATCCACAAGA
AACTAAGCGCCTACGATTGGTTTCGGGGAGTTCTGCGAGAACGATATCAT
TTACTTTGGCAAGCTTTCTAGACCAT
FMO11096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34433-RB | 835 | CG34433-RB | 8..642 | 21..656 | 3095 | 99.2 | Plus |
| CG34433-RA | 898 | CG34433-RA | 277..705 | 227..656 | 2080 | 99.1 | Plus |
| CG34433-RA | 898 | CG34433-RA | 8..214 | 21..227 | 1020 | 99.5 | Plus |
| CG34432-RA | 723 | CG34432-RA | 280..372 | 269..361 | 195 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30650237..30650665 | 227..656 | 2055 | 99.1 | Plus |
| 3R | 32079331 | 3R | 30649968..30650174 | 21..227 | 1020 | 99.5 | Plus |
| 3R | 32079331 | 3R | 30649430..30649522 | 269..361 | 195 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:58:22 has no hits.
FMO11096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:46 Download gff for
FMO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 15..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:52 Download gff for
FMO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 15..664 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:55 Download gff for
FMO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 15..664 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:55 Download gff for
FMO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30650238..30650670 | 228..664 | 98 | | Plus |
| 3R | 30649965..30650174 | 15..227 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:52 Download gff for
FMO11096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26475687..26475896 | 15..227 | 98 | -> | Plus |
| arm_3R | 26475960..26476392 | 228..664 | 98 | | Plus |
