FMO11101.5prime Sequence
1136 bp (1042 high quality bases) assembled on 2011-12-01
> FMO11101.5prime
CAGTCGACATGATAAGAGAAAAGCTATTCGGAAAACTGCTCCTCCTGCTT
GCAATGGTTTTACCATTGGGATCAGGACAAAACAGCACCCTCAAGATCAA
CACAAACGTGAAAGATATTGAAGCTGGGGTTGTGGCTCTGCCCTCCATCC
AGGGACCCGGGAACATCTGCATACGCGAGGAGCCATATGTGGAGCACGTC
CAGGTGCCAGAGATGCAGCCGGTGCGTGTGCGGACCTCCAGTTGGTGCAT
GGAGATCCCGCCGAGATGCGCCACCTTCAAGACGGAAATGCGCGAGGTGA
TGAGGGTCCAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGTCAA
GGATACGAGGGAAATTTGTCGGATAGTCAAGCCACATGCAAGCCCATTTG
CAGGGGCGGCTGTGGGCGTGGCAGTTGCGTAATGCCTGACATTTGCAGCT
GCGAAGAGGGCTATATTGGCAAACATTGCACACAGCGCTGTGATCACGAT
CGCTGGGGACTGGACTGCAAGAATCTATGCCAATGTCAAAATGGAGCAGC
CTGCGACAATAAATCGGGACTTTGTCACTGCATTGCCGGTTGGACAGGAC
AATTTTGCGAGCTGCCCTGTCCACAGGGAACTTACGGCATCATGTGCCGC
AAGGCTTGCGACTGCGATGAGAAGCCTTGCAATCCACAAACGGGTGCTTG
CATCCAGCAGGATCAACCTCTCCAACTGAATGTGAGCCACGTCATCGTGG
AGACTGTGAACTCCACGCTGGAGAAAATGGGTATTATACCGCGTCCCACC
ACGCCCGTTCCCCTGCCGGAGGTCATAGTAATTAAGCAACCGACCAGCAA
TGAAAATGCCCAACACTCACCAAAGATCATTGTCCACCAATCGAGCAGTG
ACCTACTCGAGAATCTCCATACCGGCTGCAGCCGCCGGTGTTCCCACTCC
GGAGGTCATACACGTCATCACCAATGGATCCACCTCGCACAGGAGCATTT
GTCCGATTCGTTGGAGGTGGAGGCCAATTCAAGTCAGACGGCGACCGCTG
ATCATCAGTTCCGGCCTGTGTCACACTATCAGCAATAATGCTTCCCCCTG
CTGGTCGCAATTGCGGTGGATTCACTGTATGTGTAA
FMO11101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimA-RE | 2873 | CG42282-RE | 312..1438 | 9..1135 | 5260 | 98.3 | Plus |
| NimA-RD | 2877 | CG42282-RD | 312..1438 | 9..1135 | 5260 | 98.3 | Plus |
| NimA-RF | 2185 | CG42282-RF | 66..1192 | 9..1135 | 5260 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13961249..13961779 | 605..1135 | 2055 | 94.9 | Plus |
| 2L | 23513712 | 2L | 13957850..13958152 | 9..311 | 1515 | 100 | Plus |
| 2L | 23513712 | 2L | 13960828..13961006 | 309..487 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 13961064..13961181 | 487..604 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:37 has no hits.
FMO11101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:47 Download gff for
FMO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimA-RE | 312..1438 | 9..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:54 Download gff for
FMO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RF | 66..1192 | 9..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:33 Download gff for
FMO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RF | 66..1192 | 9..1136 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:33 Download gff for
FMO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13957850..13958152 | 9..311 | 100 | -> | Plus |
| 2L | 13960831..13961005 | 312..486 | 100 | -> | Plus |
| 2L | 13961064..13961181 | 487..604 | 100 | -> | Plus |
| 2L | 13961249..13961779 | 605..1136 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:54 Download gff for
FMO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13957850..13958152 | 9..311 | 100 | -> | Plus |
| arm_2L | 13960831..13961005 | 312..486 | 100 | -> | Plus |
| arm_2L | 13961064..13961181 | 487..604 | 100 | -> | Plus |
| arm_2L | 13961249..13961779 | 605..1136 | 96 | | Plus |
