FMO11102.5prime Sequence
1109 bp (1010 high quality bases) assembled on 2011-12-01
> FMO11102.5prime
CAGTCGACATGCTTATTCTAGCCCTTGTTGTGTGGCTCGCTTACCCAAAT
CTTTGCTTGGCCCAGTACCACCTTAATCCTCCCAAGACCATCTTTCCGGA
CTTCAAGTTTCCCTCGGATTATAGGGATACACCCATAGTTTTTGAATGGA
AGAATCTGCAGTACGGCTTCCCCAGTGAACAGGAACGCGATCAGGTGCTC
CGGAATGGTCGCTATAATCCGGATAGTCCCATACCCATAGACATCGATGT
TTATTATCCACCTAATGGCGGTCCACCTAGACACTTTGTGACATCGCCTC
GCTTCGGACAGGGAGTTCCCTTTTCCCTGGGCTATGTGACCAATGTGCAG
CGGGAGAACGGAAGTGAAATCCAGGCCTATCCTAGCTACCAGTGGCACAG
TAGCCACGGAGCGAATTGCGATGGTCTAACGTCCGTGTACCGGGTTCATA
TCGATGCCTGTGGTCAGATGTGGGTGCTGGACAGCGGTGAAATTGAGTTC
GTGCAGCACTGTGCCCCACAGGTTATGGTCTTCGACTTGGCCACCGATCA
GTTGATCCATCGGTATCGTCTGCCCGAAACATCCTATAAGGCGAAGGTCA
GTAGATTTGTGAATATATTTGCAGACATCAGGGACCCACCGCCAAGTGGG
CAGTGCAAGGATGTATTTGCCTATCTGGCGGATCCCACAAGTAAGGCCAT
AGTGGTGTACGATGTCGTGGGTCAGAGCTCCTGGCGCATCGAGAACAAAT
TCACCTATCCGGATGCTAAGTTCGGAACGCACACAGTGGCTGGTGAGAGT
TTTGAGCTGCTCGATGGACCTTTGGCTTTGGCGACGACTCCTTTGGGACT
GGGATTGCGCCGCCATCTGATTTTCCACGCGCTGTCCCACGAACTGTAGC
TGGCCATTCCTTTGGATATCCTAAATATGCCACGATTGGCAAAAGGGTCT
GAGCTCCTCCCTGTCGATTCACTGTCTTGGGTAGAGAGGATCAATGGTGC
CTCGCATGCGATAGCAGACAGGATCCTGTTCTGTGGCCTCTTGAGCCAAT
CGATTTCGCCTGACTACGACGCTACAATCCGAATGTCAAGCCTATGCATA
TCCGGCTAC
FMO11102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e2-RB | 1571 | CG17044-RB | 66..1119 | 9..1052 | 4910 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13405636..13406372 | 983..251 | 3460 | 98.9 | Minus |
| 3R | 32079331 | 3R | 13406614..13406868 | 265..11 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-27 00:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 2433..2501 | 858..789 | 140 | 68.6 | Minus |
FMO11102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:48 Download gff for
FMO11102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1093 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:57 Download gff for
FMO11102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1093 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:38 Download gff for
FMO11102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 66..1124 | 9..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:38 Download gff for
FMO11102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13405555..13406361 | 262..1056 | 97 | <- | Minus |
| 3R | 13406618..13406875 | 1..261 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:57 Download gff for
FMO11102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9231277..9232083 | 262..1056 | 97 | <- | Minus |
| arm_3R | 9232340..9232597 | 1..261 | 98 | | Minus |
