FMO11103.5prime Sequence
1119 bp (1019 high quality bases) assembled on 2011-12-01
> FMO11103.5prime
CAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGATGGTCGTG
ACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTGCTCGGCCA
GGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGATCGCGCCCT
GCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCGAGACCACC
GATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGCAAGAGTCC
CATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAAGCTGCAGG
GCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCCACAACAGC
AGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGAGCGGGACT
GACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCCCTCGCAGG
CTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACCACAATAAA
ATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACCCTGGAGAT
TCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGAGGCTTTCC
GAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCAACGATCTT
ACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTAAAAGAAAC
TGGAGATTCACGAGAACAAGATACGAACTATCAGCGAAGGCGATTTCGAA
GGCTTGCAGAGCCTGACTCATTGATTTTGGCCCACACATGATCACCACCG
TGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAACTCCTTGGAGCTGG
AGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAAGGCCCTAGAG
GAGACCTGCATATCTGCGCCTGGGTGATAACCAGATCCACACTATTCCAG
CGAGGCACTGCGTCGCTGCCACCGCCCTTCGCACTTGGACTTGCGCACAC
ATATCAATGTTTTTGGCTGAGATGCTTTCACTGGCCTTGGGAGATCCTGA
ACTTTCTCACTGCAGAGACGACTCCAAGGTCCTGCCAGTCTTCTGATGGA
AACTCTACTGCCTGAACGC
FMO11103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..1937 | 8..1095 | 4805 | 97 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..1937 | 8..1095 | 4805 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 391..8 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 613..390 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 752..614 | 630 | 98.6 | Minus |
| 2R | 25286936 | 2R | 8011643..8011797 | 901..750 | 610 | 97.4 | Minus |
| 2R | 25286936 | 2R | 8011483..8011571 | 997..910 | 260 | 88.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:57 has no hits.
FMO11103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:49 Download gff for
FMO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RB | 832..1891 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:01 Download gff for
FMO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1892 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:40 Download gff for
FMO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1892 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:40 Download gff for
FMO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8011643..8011795 | 752..901 | 97 | <- | Minus |
| 2R | 8011866..8012002 | 614..751 | 98 | <- | Minus |
| 2R | 8012060..8012282 | 391..613 | 100 | <- | Minus |
| 2R | 8012347..8012732 | 1..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:01 Download gff for
FMO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899148..3899300 | 752..901 | 97 | <- | Minus |
| arm_2R | 3899371..3899507 | 614..751 | 98 | <- | Minus |
| arm_2R | 3899565..3899787 | 391..613 | 100 | <- | Minus |
| arm_2R | 3899852..3900237 | 1..390 | 98 | | Minus |
