Clone FMO11105 Report

Search the DGRC for FMO11105

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43101-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11105.5prime Sequence

353 bp (353 high quality bases) assembled on 2011-12-01

> FMO11105.5prime
CAGTCGACATGATCAAGTTTTTTGCCGTGGTTGTCTTGCTGGCCATAAGT
CCGCTATCGTCTGATTCTACTCTAATTGACATTGTGTCTAGTTGTATAAA
TTTTCAGTTTAAGGCATTACTATACCTTGCGGAATCAACTGATGATAAAT
TTCATTGTATTGAAACATGTGTATATGATATTATCAGAAATCTTACAAAG
ATTGATCTACCTAAACGCCCGGATCCCGAAATATGTCAAGGCTTAAATGA
CAAATGTAAGTACGCCGAAGGATTACGAAAGTGTCTTCCACCAAATTTAG
ATGAAAGATTTTGGAAAGATGTTTTTACACGAATAGCAAGCTTTCTAGAC
CAT

FMO11105.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG43101-RA 405 CG43101-RA 24..350 9..335 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15013102..15013362 335..75 1305 100 Minus
2R 25286936 2R 15013434..15013499 74..9 330 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:03:11 has no hits.

FMO11105.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:50 Download gff for FMO11105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43101-RA 1..330 9..339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:08 Download gff for FMO11105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43101-RA 16..362 1..350 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:45 Download gff for FMO11105.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43101-RA 16..362 1..350 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:45 Download gff for FMO11105.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15013434..15013506 1..74 94   Minus
2R 15013090..15013362 75..350 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:08 Download gff for FMO11105.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10900939..10901011 1..74 94   Minus
arm_2R 10900595..10900867 75..350 98 <- Minus