FMO11109.5prime Sequence
1104 bp (1006 high quality bases) assembled on 2011-12-01
> FMO11109.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGTAGCAACACTGTCGACACCA
CAACAACATGTTTCCCATCAACACCACCACCACCTCCGCCAACAACAACA
ACAACAACATCAACAACAAGCACCACAACAACAACCACATCCACAACACC
TTCACCACCAACAACAACTAGTTGCCCCAGCTCAATCGCACAATCTTTAT
CAATTTAAAGAACCACCGCTATTGGGACCCGGAGCCGCTTTCCCACCATT
CGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAAGGGGGCCG
CCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTGCCCGGA
CGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGGCGCCGT
CATGATGGTCTACGGCCTGACCACGACACTTCCAACACGGATAAGCTCTT
CAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGTTCTTGAAGA
CCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTGGCCGTTGAG
CGTTGCGTGCAGCACTTGAACAACATTCCCGTGGCACTGGTGGCAAGATA
CAGATCGCTTTCTCAAACAGAACTTCCTATCCGAGTGATCAACCCGTTCT
GCTGCCGATCATCGCCCAGCTTCAAGGAGTACACCGGCTCAGACATCGTT
TCTATCGCCGACAGCGAGCAGATCGCATCAACCACCGAGCCAGATTGCAC
TTTTCACCACCGCCCGGCTGACGAGACACTGAATGGGATATAACTCAGAT
GTAC
FMO11109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sm-RJ | 2379 | CG9218-RJ | 301..1385 | 8..1069 | 4850 | 97.7 | Plus |
sm-RT | 3226 | CG9218-RT | 1498..2260 | 330..1069 | 3240 | 96.7 | Plus |
sm-RK | 3175 | CG9218-RK | 1447..2209 | 330..1069 | 3240 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19538029..19538392 | 693..330 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 19546449..19546771 | 330..8 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 19532500..19532712 | 990..784 | 765 | 97.2 | Minus |
2R | 25286936 | 2R | 19537776..19537872 | 784..689 | 435 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:47 has no hits.
FMO11109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:53 Download gff for
FMO11109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 278..1386 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:27 Download gff for
FMO11109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 295..1403 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:59 Download gff for
FMO11109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 295..1403 | 1..1082 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:59 Download gff for
FMO11109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19532436..19532711 | 785..1043 | 93 | <- | Minus |
2R | 19537776..19537868 | 693..784 | 98 | <- | Minus |
2R | 19538030..19538391 | 331..692 | 100 | <- | Minus |
2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:27 Download gff for
FMO11109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15419941..15420216 | 785..1043 | 93 | <- | Minus |
arm_2R | 15425281..15425373 | 693..784 | 98 | <- | Minus |
arm_2R | 15425535..15425896 | 331..692 | 100 | <- | Minus |
arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |