Clone FMO11109 Report

Search the DGRC for FMO11109

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:9
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsm-RJ
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11109.5prime Sequence

1104 bp (1006 high quality bases) assembled on 2011-12-01

> FMO11109.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGTAGCAACACTGTCGACACCA
CAACAACATGTTTCCCATCAACACCACCACCACCTCCGCCAACAACAACA
ACAACAACATCAACAACAAGCACCACAACAACAACCACATCCACAACACC
TTCACCACCAACAACAACTAGTTGCCCCAGCTCAATCGCACAATCTTTAT
CAATTTAAAGAACCACCGCTATTGGGACCCGGAGCCGCTTTCCCACCATT
CGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAAGGGGGCCG
CCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTGCCCGGA
CGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGGCGCCGT
CATGATGGTCTACGGCCTGACCACGACACTTCCAACACGGATAAGCTCTT
CAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGTTCTTGAAGA
CCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTGGCCGTTGAG
CGTTGCGTGCAGCACTTGAACAACATTCCCGTGGCACTGGTGGCAAGATA
CAGATCGCTTTCTCAAACAGAACTTCCTATCCGAGTGATCAACCCGTTCT
GCTGCCGATCATCGCCCAGCTTCAAGGAGTACACCGGCTCAGACATCGTT
TCTATCGCCGACAGCGAGCAGATCGCATCAACCACCGAGCCAGATTGCAC
TTTTCACCACCGCCCGGCTGACGAGACACTGAATGGGATATAACTCAGAT
GTAC

FMO11109.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
sm-RJ 2379 CG9218-RJ 301..1385 8..1069 4850 97.7 Plus
sm-RT 3226 CG9218-RT 1498..2260 330..1069 3240 96.7 Plus
sm-RK 3175 CG9218-RK 1447..2209 330..1069 3240 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19538029..19538392 693..330 1820 100 Minus
2R 25286936 2R 19546449..19546771 330..8 1615 100 Minus
2R 25286936 2R 19532500..19532712 990..784 765 97.2 Minus
2R 25286936 2R 19537776..19537872 784..689 435 99 Minus
Blast to na_te.dros performed on 2014-11-27 00:03:47 has no hits.

FMO11109.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:53 Download gff for FMO11109.5prime
Subject Subject Range Query Range Percent Splice Strand
sm-RJ 278..1386 1..1082 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:27 Download gff for FMO11109.5prime
Subject Subject Range Query Range Percent Splice Strand
sm-RJ 295..1403 1..1082 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:59 Download gff for FMO11109.5prime
Subject Subject Range Query Range Percent Splice Strand
sm-RJ 295..1403 1..1082 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:59 Download gff for FMO11109.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19532436..19532711 785..1043 93 <- Minus
2R 19537776..19537868 693..784 98 <- Minus
2R 19538030..19538391 331..692 100 <- Minus
2R 19546449..19546774 1..330 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:27 Download gff for FMO11109.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15419941..15420216 785..1043 93 <- Minus
arm_2R 15425281..15425373 693..784 98 <- Minus
arm_2R 15425535..15425896 331..692 100 <- Minus
arm_2R 15433954..15434279 1..330 98   Minus