FMO11112.5prime Sequence
1093 bp (938 high quality bases) assembled on 2011-12-01
> FMO11112.5prime
CAGTCGACATGTTGTTGATGGAGCTCGGGATTTTCTTTGACTGGCTGTTG
ATCGTCTCTGGTATGCCGAAGGTGAAGTTTGGCCTCCAAAATTTTACGGG
TCGTGGTAAAGATTACCGCATCAAAGTGATTACTGGGATTCTTATAATAG
ACAAGTACGGCTACTCAGTGGAGACGCACACGGTTCGCACTGGAGATGGA
TACATTCTGGATATGTTTCGGATTCCCTCATCACCCAACTGCAAGGAGGA
CGGTTTCAAGCCGTCTGTTCTTATCCAGCACGGACTGATCAGCCTGGCCG
ATTCCTTCCTGGTGACGGGACCGAGGAGCGGACTTCCATTCATGCTGGCC
GATCGCTGCTACGACGTGTGGCTGAGCAACAGCCGGGGAGTCCGCTACTC
GCAGCGCCACATCCGGCTGAAGGCTTCCCAGGATGCCTTCTGGCGCTTTA
GCTGGCACGAAATGGGAATGGAGGACCTGCCCGCCATGATCGACTACATC
CTGTCCACGACAAACGAGGAAGCGTTGCACTTCGTTTGCCATTCTCAGGG
ATGCACCACCCTACTGGTTTTGCTCAGCATGAAGCCGGAGTATAACCGGA
TGATAAAGACGGCCAACATGATGGCCCCCGCCGTTTTCATGAAGCACGCA
AGGAACAAGCTAATGAAAATGTTTGGGAACATCATTATGAGCATGAAGGA
CAGTAGTTTTTTTGGCCCCTTAGATGCTATAAGATTCCTGCTATCCGTTT
TTTGCAAATGCTCGAAGTTTAAAAATTGTGCGCCTTTATGTTCATATTGG
CCAGTGAAGAACCAACATCGTATATGAACAATACCGCCATACCATTGATA
TTAGCAACGCATCCTGGTGCGATTTCCACTCGACAGCCAAAGCACTTTCT
TCACCTCCGGAAATCTGGAAAATTCCGTCCGTATGACTTCGAGTCATGAA
AATAAAAAACTAATACATTCAGACCCGCCTTCCCGATTATCGGTGGAAAC
GTCCGCCCCTCAGTCGCCCATTTCCTATATATACCCACAGCCATGGTGAC
GACCTTGGGTGGCCCGCAAGACATCCCCATACCTGAATCAGCA
FMO11112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11600-RB | 1330 | CG11600-RB | 14..1094 | 9..1093 | 4915 | 97.7 | Plus |
| CG11598-RB | 1248 | CG11598-RB | 361..522 | 435..596 | 285 | 78.4 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 363..523 | 437..597 | 265 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12636735..12637431 | 137..832 | 3435 | 99.9 | Plus |
| 3R | 32079331 | 3R | 12636553..12636681 | 9..137 | 630 | 99.2 | Plus |
| 3R | 32079331 | 3R | 12637485..12637703 | 833..1053 | 570 | 88.8 | Plus |
| 3R | 32079331 | 3R | 12635332..12635493 | 435..596 | 285 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12633781..12633941 | 437..597 | 265 | 77.6 | Plus |
| 3R | 32079331 | 3R | 12639039..12639190 | 441..592 | 220 | 76.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:28 has no hits.
FMO11112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:46 Download gff for
FMO11112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 1..1080 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:49 Download gff for
FMO11112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 5..1093 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:29 Download gff for
FMO11112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11600-RB | 5..1093 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:29 Download gff for
FMO11112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12636544..12636681 | 1..137 | 96 | -> | Plus |
| 3R | 12636736..12637431 | 138..832 | 99 | -> | Plus |
| 3R | 12637485..12637739 | 833..1092 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:49 Download gff for
FMO11112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8462266..8462403 | 1..137 | 96 | -> | Plus |
| arm_3R | 8462458..8463153 | 138..832 | 99 | -> | Plus |
| arm_3R | 8463207..8463461 | 833..1092 | 91 | | Plus |
