FMO11114.5prime Sequence
590 bp (590 high quality bases) assembled on 2011-12-01
> FMO11114.5prime
CAGTCGACATGGATTCCGGCTATTCGTCAGTCTTAATATTGTTGGCAGTT
TGGCTAATCAGTAGATGCGGAGCAGCGCGGAAATGGGAGTACGAACCTGT
ATTGATATTAACCACCTCTTCGGACGACAGTCTAATAAAATTAGAGTCCA
GTATTGTTCGCTTAGGGCGTGGAAAGTTTGGAATATCAGCGCGGGTGGAG
TGGAACTATGACACCACTGAGGAGACAATGGTGGAGGCTGTTGTATACCG
CAGCAATTCGGGTGATGAGTCCGACTACAAGCTGCTCCCTTGGGCCATTC
CTAAGCAAACCTTTTACGACTACCTCAACTCCTACTACAAGGATGTGATA
ATGAAGAACTTTGCCCCCTGTTCCAATGTGCCGCAGTTCAAGGGCAAATT
TCAACCGCCTTGGCCGAAACGAACGTATATCGGTGACAAATGCGTCTTTG
AAGCCGAAGGTTTTCCGGATATCGTGCCACCTGGATTCTACAAGATTATT
TTCAATTGTACCGGACCTGATCAGCCATCGTGGAGCTTTATCGGAATTTT
TAAAATAATAAACAAAATGTTTGCAAGCTTTCTAGACCAT
FMO11114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18537-RA | 607 | CG18537-RA | 18..581 | 9..572 | 2820 | 100 | Plus |
| CG18538-RA | 549 | CG18538-RA | 246..419 | 272..445 | 315 | 78.7 | Plus |
| CG18536-RA | 788 | CG18536-RA | 351..502 | 198..349 | 265 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18296288..18296630 | 230..572 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 18296072..18296229 | 77..234 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 18295945..18296013 | 9..77 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 18297448..18297621 | 272..445 | 315 | 78.7 | Plus |
| 2R | 25286936 | 2R | 18295272..18295372 | 249..349 | 205 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:04:31 has no hits.
FMO11114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:57 Download gff for
FMO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 1..567 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:48 Download gff for
FMO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 18..592 | 9..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:17 Download gff for
FMO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18537-RA | 18..592 | 9..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:17 Download gff for
FMO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18296073..18296225 | 78..230 | 100 | -> | Plus |
| 2R | 18295945..18296013 | 9..77 | 100 | -> | Plus |
| 2R | 18296289..18296641 | 231..585 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:48 Download gff for
FMO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14183450..14183518 | 9..77 | 100 | -> | Plus |
| arm_2R | 14183578..14183730 | 78..230 | 100 | -> | Plus |
| arm_2R | 14183794..14184146 | 231..585 | 98 | | Plus |
