Clone FMO11115 Report

Search the DGRC for FMO11115

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:15
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42737-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11115.5prime Sequence

227 bp (227 high quality bases) assembled on 2011-12-01

> FMO11115.5prime
CAGTCGACATGAAAAGATGCAGCCGTATAAATCGCACTGGAATTGAGCGA
TCGCAGTTATTGACTCGTCTCAATTGTCGCAGCGATGAAGTGGTTTTCGA
TTTTGTTTGCGCTACTGGCGCTCATTTTCTTCGTCGAATTTGGATATGCT
CGAACAATTCCCAGGATTACCATTCGCAATGGCGACATTATAGTTCATGG
CAATTGCAAGCAAGCTTTCTAGACCAT

FMO11115.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG43202-RA 390 CG43202-RA 1..206 4..209 1015 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18381696..18381845 152..3 735 99.3 Minus
2R 25286936 2R 18381577..18381634 209..152 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:04:40 has no hits.

FMO11115.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:57 Download gff for FMO11115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42737-RA 1..209 4..212 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:52 Download gff for FMO11115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43202-RA 1..211 4..216 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:20 Download gff for FMO11115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43202-RA 1..211 4..216 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:20 Download gff for FMO11115.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18381572..18381634 152..216 93 <- Minus
2R 18381697..18381846 1..151 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:52 Download gff for FMO11115.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14269077..14269139 152..216 93 <- Minus
arm_2R 14269202..14269351 1..151 98   Minus