Clone FMO11118 Report

Search the DGRC for FMO11118

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42554-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11118.5prime Sequence

665 bp (665 high quality bases) assembled on 2011-12-01

> FMO11118.5prime
CAGTCGACATGGACTGCGCACCACTGAACTTGGCTCATTTCCACGAGCGA
AGGTCGGAGCGATTTATACGCAATCACCGCTATGAGGAGGCCATTAAAGC
GCTGGAAACATCCCTAATCTACATGCAGGATGCCCAAAAACGGGTGGCTC
TGCCCAAATCCAAGGAAGTTCTGGACACATTGACCCTCGATTTTCAGCGC
AAACTGCGTCAAATTGAGATGCGAAAGACGCAGCATGGTCTGAACAAGCT
GAAGGATTATGCTCCCTTGAAGGAAACCAGTCCCATGCTGCCCCTGCGAC
CAGAAGCCGGAGCAAGTGGAGGCGCAGGAGGATCCGCTCAGTCGGTGGCC
AAGGCAATCGACAAAACAGTGCAGGACTTCGATGCCAAGTTCACCTCCTC
CTTGGTGGCAAAGGCCTCTAGCACACTGGCCCATTCGGAGCCCCATATGG
AGACGCTGAAGAAGAGCGATTCTGCCCAGGAGGAGCAGGAACACGATACT
TGCGATCAGCGGCTGGCGGGCAGTGGAGACCTGGACCTGCCATCCTTGGC
GCCCTTGGAGTTGCCCTCCTTCGATTACAGCCTGTTCACCAGCTCCTCGG
CTCCTTCGTTGGCCAGCTATGCCGGCATGGCTGAGAGCTTCCAGAAAGCA
AGCTTTCTAGACCAT

FMO11118.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42554-RA 1023 CG42554-RA 163..803 7..647 3205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 835935..836550 32..647 3080 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:05:04 has no hits.

FMO11118.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:59 Download gff for FMO11118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 30..682 1..648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:03 Download gff for FMO11118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 154..808 1..653 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:30 Download gff for FMO11118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42554-RA 154..808 1..653 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:30 Download gff for FMO11118.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 835936..836555 33..653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:03 Download gff for FMO11118.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 835936..836555 33..653 99   Plus