Clone FMO11119 Report

Search the DGRC for FMO11119

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:19
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42661-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11119.5prime Sequence

449 bp (449 high quality bases) assembled on 2011-12-01

> FMO11119.5prime
CAGTCGACATGTGCTTTTGTCCGACACTTGGTCTCAAAATTGTACTTTTG
TTAGTAATACCTATAACCGCAGGAATTAATGGTGCTCAAATAGCCAAAGA
TGTTTCTATATTGAATTTATTAAAGGGATACCATTATATTATGCTTATTA
TAAGCCTATCCCTGTCCGTAGTTATACTGGCGACTCTGGTTCTTTTAATA
TATGCGGCGATCTGTAATAAAATTCGAATTCTGAAAGTGATGATCTTTGT
TTATGTAGCCATCGTCGTGGTGAAACTGATAATTCTGTTCGTGTGTCTAA
GTACTGAATTGAATCCTGACAAGACGACAGCCCATCCCATATTTATGATA
TGCTGGCTCCTTACGTTCTTATGTATGGCCGTTATAATAATATACTGGCT
TCGGCTACATGACCTTGCCAACGAAGACAATGCAAGCTTTCTAGACCAT

FMO11119.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42661-RB 2597 CG42661-RB 536..958 9..431 2115 100 Plus
CG42661-RA 2531 CG42661-RA 536..958 9..431 2115 100 Plus
CG42660-RB 2597 CG42660-RB 536..958 9..431 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7466401..7466568 72..239 840 100 Plus
3L 28110227 3L 7466625..7466751 239..365 635 100 Plus
3L 28110227 3L 7466818..7466884 365..431 335 100 Plus
3L 28110227 3L 7466286..7466349 9..72 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:05:16 has no hits.

FMO11119.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:00 Download gff for FMO11119.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66A-RD 532..958 1..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:08 Download gff for FMO11119.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42660-RA 532..958 1..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:34 Download gff for FMO11119.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42660-RB 532..958 1..431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:34 Download gff for FMO11119.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7466282..7466348 1..71 94 -> Plus
3L 7466401..7466568 72..239 100 -> Plus
3L 7466626..7466751 240..365 100 -> Plus
3L 7466819..7466884 366..431 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:08 Download gff for FMO11119.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7459382..7459448 1..71 94 -> Plus
arm_3L 7459501..7459668 72..239 100 -> Plus
arm_3L 7459726..7459851 240..365 100 -> Plus
arm_3L 7459919..7459984 366..431 100   Plus