Clone FMO11121 Report

Search the DGRC for FMO11121

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43061-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11121.5prime Sequence

185 bp (185 high quality bases) assembled on 2011-12-01

> FMO11121.5prime
CAGTCGACATGTTGATTGCCCGACTTGGATTCTTGTTGTGCTCATTGGGC
CTTGCAACTGCCATATGTCAAACGAATGGGGAAAGTTGTAAGTCGCATGC
GGATTGCTGCTCCACGATGTGCCTGACCCAACTGGGTCAGTGTTCACCCA
AAAGGGGAGATCAGTGGGCAAGCTTTCTAGACCAT

FMO11121.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG43061-RA 329 CG43061-RA 30..188 9..167 795 100 Plus
Sfp93F-RA 329 CG42608-RA 30..188 9..167 765 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8049838..8049918 87..167 405 100 Plus
3R 32079331 3R 21736050..21736130 167..87 405 100 Minus
3R 32079331 3R 8049702..8049779 9..86 390 100 Plus
3R 32079331 3R 21736190..21736267 86..9 360 97.4 Minus
Blast to na_te.dros performed on 2014-11-27 00:05:35 has no hits.

FMO11121.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:01 Download gff for FMO11121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43061-RA 23..193 1..175 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:16 Download gff for FMO11121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43061-RA 23..193 1..175 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:43 Download gff for FMO11121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43061-RA 23..193 1..175 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:43 Download gff for FMO11121.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21736045..21736130 87..175 95 <- Minus
3R 21736190..21736274 1..86 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:16 Download gff for FMO11121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17561767..17561852 87..175 95 <- Minus
arm_3R 17561912..17561996 1..86 93   Minus