FMO11123.5prime Sequence
686 bp (686 high quality bases) assembled on 2011-12-01
> FMO11123.5prime
CAGTCGACATGTATTATTTTCCTACCTCAGTCATGTGGAGCGCTCTTGGT
TTTTCGCCTCTTTTGGCTGTTTTGATTTTACCCAAATGGGCCTCTTCTAC
AAAGATGAAAGCCTATTTAGATCTCGATACCCGATTAAAGACACAATTAC
GGGGCTACTCGGAAGACCTGCAGGATCACATTAGTACCTTAAATCGTTAT
ATAGATGATCGAAAATCTGAGCTAGATAAAGTGGGAAAAGATCCTGAAGT
GTATCTGGGCAATCCTCTTAATAGCTTCTCTTTATTACACCATTTGCACT
TTGATTGGCCAGCTTGGAGAAAGCTAATGGAAAAGCCCTTAGCCACAGAG
TACATAACCGAGATTCAAGAGATGTGGAGCGAGATGCCAACGAAAGATGA
ATATACGAATTCCATTAAAGCTGCCAAGGATTTCCATAAGAACGAAACTC
AGGGAAATTTTGAATTTAGTCCTTTGGAGTCTCTGCAAATCGCTCTGCAT
GCATACGACAAGAAAAACTATACGGAGGCGGAGAACTGGCTAAATATTAC
CTTAAATGGTTATAAAAACCTCAGTCTCCAAGAAAAGGATCTTTATGAAG
TTCTAAGTCCTGTTAGTGAGAGTCAGGTGGAGGATCTTTATACCAAAGTC
AGGAAAATAAAAAATGAAGCAAGCTTTCTAGACCAT
FMO11123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34041-RD | 697 | CG34041-RD | 27..686 | 9..668 | 3300 | 100 | Plus |
| CG34041-RF | 1733 | CG34041-RF | 27..633 | 9..615 | 3035 | 100 | Plus |
| CG34041-RE | 1676 | CG34041-RE | 27..633 | 9..615 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30508663..30508864 | 467..668 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 30508049..30508248 | 9..208 | 970 | 99 | Plus |
| 3R | 32079331 | 3R | 30508286..30508438 | 196..348 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 30508494..30508616 | 347..469 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:04:05 has no hits.
FMO11123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:55 Download gff for
FMO11123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 22..689 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:35 Download gff for
FMO11123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 22..689 | 1..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:07 Download gff for
FMO11123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34041-RD | 22..689 | 1..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:07 Download gff for
FMO11123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30508044..30508236 | 1..196 | 97 | -> | Plus |
| 3R | 30508287..30508438 | 197..348 | 100 | -> | Plus |
| 3R | 30508496..30508616 | 349..469 | 100 | -> | Plus |
| 3R | 30508666..30508867 | 470..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:35 Download gff for
FMO11123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26334388..26334589 | 470..672 | 99 | | Plus |
| arm_3R | 26333766..26333958 | 1..196 | 97 | -> | Plus |
| arm_3R | 26334009..26334160 | 197..348 | 100 | -> | Plus |
| arm_3R | 26334218..26334338 | 349..469 | 100 | -> | Plus |
