FMO11129.5prime Sequence
1121 bp (1018 high quality bases) assembled on 2011-12-01
> FMO11129.5prime
CAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGAAACTGCGC
GATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCCAAGCGTTC
CGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTTCCTGTTCA
TGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGGTGAAGCTG
CAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCACATCAGCGG
ACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGGCACCTACC
AATATCTGAAGAGCACTGGCCAGCTAAAACACCTGACCACCGCCCAGCTA
AACAACACTCCTCGCGCCCAAGTGGACACGCTGTTCTTCAATCGGATCAC
CAAGACCGGCAGCGAGAAGATGATGGAGTTGCTCAAGATCCTGGGCAAGC
GCCACAACTTTGAGGCGCGTCGCGATGTTGAGGGATTCTACGAAGTAGTC
ATCATGCATGACGCCTTCGCCAAAAACTTTATCCGCACCGAGGTACTCAA
CTGCACCAAAGCCAATAGCTATACGAAGCACGTAGCCTTCCTGGACTTCG
ATCTACTGGACGAACCCTGGCCCATATACATCAATATGGTGCGAGATCCC
ATCGAGCGGCTGGTCAGCTGGTTCTACTATGTCCGCGCCCCCTGGCATTT
CGCCGAGAGAAAGGAAATGTTCGGGGATGCCATCGTACTGCCTAGCATAG
ATTGGCTCACGAAAGGACTTTAACCGCTGCATCGAGGAACGCGATCCCGA
GTGTGTGTACGAGCAAATGGAAATGGGCAATCTGGGCGATCATAGGCGGC
AGTCACTGTATCTCTGCGGTCAGAACATGGCGGTGTGCATGCCCTTCAAC
TCCCATGAGCCATGCAGCGGGGCAAGAGAATGTGGAGGAGCACTACGCAG
TGTGGGACCTGGAGATACGAACACCACGTTGTCGTCTCGAGGTTAATATA
CCACGGTTCTTCAGTGGGGCAGACAGTACTACGCGTGAGGAAAGGTTGGA
ACTATAACAGGAATACTAACGAACCAGTTCTCATGAACAGGCAGGGCGGT
ATCAGCGAACTACCGGTACAT
FMO11129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pip-RK | 1478 | CG9614-RK | 180..1295 | 9..1106 | 4905 | 97 | Plus |
| pip-RM | 2975 | CG9614-RM | 180..496 | 9..325 | 1585 | 100 | Plus |
| pip-RJ | 1490 | CG9614-RJ | 180..496 | 9..325 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19311618..19312187 | 891..321 | 2790 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19318784..19318951 | 264..97 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 19337342..19337430 | 97..9 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 19311174..19311316 | 1020..886 | 315 | 89.5 | Minus |
| 3L | 28110227 | 3L | 19313152..19313214 | 327..265 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:51 has no hits.
FMO11129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:07 Download gff for
FMO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RK | 164..1255 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:52 Download gff for
FMO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RK | 174..1265 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:13 Download gff for
FMO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RK | 174..1265 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:13 Download gff for
FMO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19311619..19312184 | 324..890 | 99 | <- | Minus |
| 3L | 19313156..19313214 | 265..323 | 100 | <- | Minus |
| 3L | 19318784..19318954 | 95..264 | 99 | <- | Minus |
| 3L | 19337345..19337436 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:52 Download gff for
FMO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19304719..19305284 | 324..890 | 99 | <- | Minus |
| arm_3L | 19306256..19306314 | 265..323 | 100 | <- | Minus |
| arm_3L | 19311884..19312054 | 95..264 | 99 | <- | Minus |
| arm_3L | 19330445..19330536 | 1..94 | 95 | | Minus |
