FMO11130.5prime Sequence
865 bp (865 high quality bases) assembled on 2011-12-01
> FMO11130.5prime
CAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCGCGTTGCTG
CTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGCGAGCGGGC
TGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGCGGTAGCTC
CTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACGATGATGAG
CCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGATGAGGAGGA
GGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCAGGCTGCTC
CAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATGATGATGAC
GATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGATGAAGATGA
GGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAGCGCTGTGG
CCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTGCCGCCTCC
TCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCCGAGTCCGG
AAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGAGTCCGTTT
CCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCAGCAACAAC
GAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGATGATGACGA
TGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCGCCGTGAAG
CACGTGAGTCCAAATCGAAGTCGGAAACGGCGACGAAGAAACCAAGGCCA
AGAAATCAACAAGTCCCTCAAAGAAGGCCAAGAAAGAGCTGAAGCATGCA
AGCTTTCTAGACCAT
FMO11130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ect-RD | 2426 | CG6611-RD | 189..1030 | 7..847 | 4185 | 99.9 | Plus |
| ect-RB | 2046 | CG6611-RB | 132..882 | 7..757 | 3755 | 100 | Plus |
| ect-RA | 2103 | CG6611-RA | 189..939 | 7..757 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10195441..10195710 | 656..387 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 10196208..10196435 | 234..7 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 10194802..10194997 | 847..653 | 930 | 99.5 | Minus |
| 3L | 28110227 | 3L | 10195819..10195972 | 387..234 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:06:56 has no hits.
FMO11130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:08 Download gff for
FMO11130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RD | 179..1029 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:54 Download gff for
FMO11130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RD | 183..1033 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:15 Download gff for
FMO11130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RD | 183..1033 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:15 Download gff for
FMO11130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10194799..10194995 | 655..851 | 98 | <- | Minus |
| 3L | 10195443..10195709 | 388..654 | 100 | <- | Minus |
| 3L | 10195819..10195971 | 235..387 | 100 | <- | Minus |
| 3L | 10196208..10196441 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:54 Download gff for
FMO11130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10188919..10189071 | 235..387 | 100 | <- | Minus |
| arm_3L | 10187899..10188095 | 655..851 | 98 | <- | Minus |
| arm_3L | 10188543..10188809 | 388..654 | 100 | <- | Minus |
| arm_3L | 10189308..10189541 | 1..234 | 98 | | Minus |
