FMO11131.5prime Sequence
850 bp (850 high quality bases) assembled on 2011-12-01
> FMO11131.5prime
CAGTCGACATGGAAAGATTTGGTATTCCACGTGGTAAGCGTCCCCGAGTC
CAAGTTTCATTGGACGACAAGGAGCGAGCCATAGCCCGAATCCGAGGTGG
TGAAACCAAGGCCGGAATATCACGCGAATTGGGTGTTCCGGAGTCTACGG
TTCGCGGTTGGGTGAAACGAGCTGAGCAGCGGTTGGCCCGAGAGACAACT
AGCCAAACGGGTTCTGCCAACTATTCCACAATCCTGGCCATGACCCTAGC
GAAACCGCAAGTTACCATCAGCACAAAATCGTCGGCTTCGTCTGTCATTT
CTAAATCATCATACTCATCGCCACCGCTGGATTTGAAACCCCTGAAACAG
CCCCAGAAACGAAACATTAATGGTCATCCGGTAACGTGCACCCAGGATCC
AGTCGAGGATTCAGCAGCTACATCCATCCCCATCCCCGTTCCGATTCCGG
TGCCCCTTCCTGTGCCGCCAATGGTTTCGCCTGACAGTGAGCAACAGATG
AGCGCTTGGTTGCATATATTCAATGCGGGAATTCTGAACTTCACTCTGAT
TGCCTCCGCTGCAGTGCTTCAGGCTCGCTCGCGTGGTTTGGCGGATCGCC
TGCCGTTGTGGCAAATTATCACGGATTTTGTTGATGAAGCCGAACGTAAT
GTGAATGCCAACGGGGGTTGGTACCTCGAGGGACAGCCGGCGACAGGACA
CATGAGTGCCAGGCAACGGCCAGTCCGAGTGCCCACGAAAGTGCATTCAT
ATCGCTGAACTTGAAAGCACCACCGGCTCATATTACCGCCGAAGATGACG
AAGACTCCTACACGGACGCTGATGTGCCACACGCAAGCTTTCTAGACCAT
FMO11131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30401-RC | 1188 | CG30401-RC | 225..1049 | 9..832 | 4055 | 99.5 | Plus |
| CG30401-RA | 1258 | CG30401-RA | 295..1119 | 9..832 | 4055 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21985765..21986395 | 832..203 | 3045 | 99.2 | Minus |
| 2R | 25286936 | 2R | 21986441..21986644 | 212..9 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:07:06 has no hits.
FMO11131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:08 Download gff for
FMO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 1..828 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:59 Download gff for
FMO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 173..1003 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:18 Download gff for
FMO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30401-RA | 295..1125 | 9..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:18 Download gff for
FMO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21985759..21986387 | 211..839 | 98 | <- | Minus |
| 2R | 21986443..21986644 | 9..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:59 Download gff for
FMO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17873264..17873892 | 211..839 | 98 | <- | Minus |
| arm_2R | 17873948..17874149 | 9..210 | 100 | | Minus |
