FMO11132.5prime Sequence
425 bp (425 high quality bases) assembled on 2011-12-01
> FMO11132.5prime
CAGTCGACATGAATATCTTTATCTCCTTAATATTGGTAGTGCTGGCCATT
TTATCTTTTGCTGACCACACCGTGGCAGACGGAGATCGGCACCTAAATGA
GGACTTAAATCGAGCGACGGTAAAGAAGACTAAGTATGGTTGGCAATGTG
CCGGGGTGACGTGCCCCATAAAGTTTACGGCATCTTGTAAGGTAACAAAG
GTCCTAAAGCCCTCTGATCTACAGCACACTGAGCTCCTGATTTTGTGCAT
GGATAAAAACGATAAGCCTATGTGTGGGATAACACGAACTCGAAAAGGGG
TAATACAGGAAGTTCTGGACGTGGATGAAAACGGAAATACGATATATGAC
AAAAAGGAAGTTATTTCGGAGAACGATGGTACTAAAATCCCTAGGTGCCC
ACGAAAGGCAAGCTTTCTAGACCAT
FMO11132.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp78E-RA | 778 | CG42607-RA | 147..545 | 9..407 | 1995 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 239..572 | 74..407 | 1670 | 100 | Plus |
| Sfp78E-RB | 805 | CG1-RB | 123..189 | 9..75 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21683331..21683602 | 407..136 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 21683776..21683842 | 75..9 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 21683665..21683726 | 135..74 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:07:16 has no hits.
FMO11132.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:09 Download gff for
FMO11132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:04 Download gff for
FMO11132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:21 Download gff for
FMO11132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp78E-RA | 139..548 | 3..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:21 Download gff for
FMO11132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21683665..21683725 | 75..135 | 100 | <- | Minus |
| 3L | 21683777..21683850 | 3..74 | 95 | | Minus |
| 3L | 21683327..21683602 | 136..411 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:04 Download gff for
FMO11132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21676427..21676702 | 136..411 | 99 | <- | Minus |
| arm_3L | 21676765..21676825 | 75..135 | 100 | <- | Minus |
| arm_3L | 21676877..21676950 | 3..74 | 95 | | Minus |
