Clone FMO11134 Report

Search the DGRC for FMO11134

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6901-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11134.5prime Sequence

1139 bp (1029 high quality bases) assembled on 2011-12-01

> FMO11134.5prime
CAGTCGACATGAGTGGTATGCAAACCACAACTGTGGACCCAGTACCCAGC
CCCCCACAGGAAACCATCATCATCGCCACCGCGCCACCACCTGAGCCCAG
AAAACCGGCTGTGACCACTAATAACCGAGGATACTTTACCCGCATCAATA
AACAGAATTATGCGTCCTATACAGTTTTCTTCCTATTCATCTATGGTGGC
ATGGACATGGCAGCCAGCTTGGGCTGGAGTCAACCCTACAGCGTCCTCCT
ATTCACGGAGTACTCGTACTGTTGGTTTGTAGGTGTCATCATTGGAGCGC
TGGCCACCACTCTCACCATGTCTTTTCTGCCCAAGCTGGTCTACTATGTT
TTTGGTGCTCTTATGCAACTAACTGGATCCATTATATTTACGGCTGCAGA
CTATTCCGCCTGCCTGGCGGCCCGCTATTTGGCCGGGTTAGGGATTGGCC
TCATTACGGTGCCATTCCTCATTCACAATGCTGAGGTGGCATCTAACAAC
TTACGAGGAGTCAACGGCGGAATGGAGCAGTGCGGTCTAGCCCTCGGAAT
TTTCTTTCAAGTGATTTTTACTACGGAGTGGACTTCATTAATTGACTCAA
ACCCAAACGAGATCCATGGCATCATAGGGATCGTCGTCTCATTGTTTGGT
TTGGCGATGACTGCCCTGGTGGTAGAGTCGCCAATCTTCTTTCTACGTCG
AAATATGGAGAACAGGGCGCAGCAGAGTCAGGAGAAACTTTTGAGACATA
ATCCCGGTGGCGTTAGTGCAGCTCTGAAGGAGCCAGAAAGTATGTGGCGG
AGAGCGACAACCGGACCCTGGGGGAGGAACTGGTGGCCTCGGTGATGCCC
TTCTTGAAATGCTACTCTTTCGCTGCTTCGTGGCATTCTCCTTCTCTCTG
CCGCTGACCATGTCGATCATCTCGAGCACGCAGTAGCGGAGAAAGGACTC
AGTCTTTGGCCAATCTACCTATTTGGCGTTCTCGTGTGATTGGAGTAATG
GTGGCTTTGATATTCTGAACCTTTTGGTTCGCAAGCGTGTCCTTGAGGGA
CTCCTTGTTATTGGCCGGAACTATGCTCCGATGGCGTTATATGCACGTGA
CCAACTTATTGCCTAACCTATGACTTCGCCTGCAATTCC

FMO11134.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6901-RA 1581 CG6901-RA 40..1152 9..1108 5050 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16323926..16324597 348..1015 3145 99.3 Plus
3R 32079331 3R 16323677..16323854 172..349 890 100 Plus
3R 32079331 3R 16323454..16323619 9..174 830 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:05:45 has no hits.

FMO11134.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:02 Download gff for FMO11134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6901-RA 1..1002 18..1015 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:22 Download gff for FMO11134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6901-RA 38..1050 6..1015 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:47 Download gff for FMO11134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6901-RA 38..1050 6..1015 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:47 Download gff for FMO11134.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16323452..16323619 6..174 99 -> Plus
3R 16323680..16323852 175..347 100 -> Plus
3R 16323926..16324597 348..1015 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:22 Download gff for FMO11134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12149174..12149341 6..174 99 -> Plus
arm_3R 12149402..12149574 175..347 100 -> Plus
arm_3R 12149648..12150319 348..1015 99 == Plus