FMO11135.5prime Sequence
530 bp (530 high quality bases) assembled on 2011-12-01
> FMO11135.5prime
CAGTCGACATGCTGCGAATCGTTGTAACTTTGGCTCTAATTCTGGCCACA
GTCAATGCCACCAATGTCCAGCAGTGCAAAAATAAGCCGTTTCCACTGGA
TGTGAATATTAAGGATTGCGAGGAACCGCCGTGCGTTGTGTACAAAGGAA
CCATAGCAGTCATGGAGGTGCACTTCCTGGGCAATAACAACAATATCAAG
AGCATTACGGCCACCACAACGGCAAAGGTTTTGGGCATGAATCTGCCATA
TGCCCTACCCGACGAAGTGTCCGATGTGTGCCGCAATCTCCTGTACGGTG
CCATCTGTCCCATCGACAAGGACGAGGATGTCACGTATCAGTTCAACTTC
TATGTGGAGCCTTCGTTCCCGGAAATAACGGCGGATGTCACTGTCACGTT
GAACGATGCGCAGAACGAACCGATCACCTGCTTCGTCGTGAGCTGTAAAA
TCCGGAAGGGAGCCACTGCAGCACAGATGGACGGATATCTGTTGGACTGG
ACGAACCCCCTTGCAAGCTTTCTAGACCAT
FMO11135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2e-RB | 661 | CG31410-RB | 67..570 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10053929..10054257 | 184..512 | 1645 | 100 | Plus |
| 3R | 32079331 | 3R | 10053763..10053874 | 76..187 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 10053398..10053465 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:05:54 has no hits.
FMO11135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:03 Download gff for
FMO11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2e-RB | 1..507 | 9..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:26 Download gff for
FMO11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2e-RB | 60..575 | 1..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:51 Download gff for
FMO11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2e-RB | 60..575 | 1..518 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:51 Download gff for
FMO11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10053391..10053464 | 1..75 | 94 | -> | Plus |
| 3R | 10053763..10053870 | 76..183 | 100 | -> | Plus |
| 3R | 10053929..10054262 | 184..518 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:26 Download gff for
FMO11135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5879113..5879186 | 1..75 | 94 | -> | Plus |
| arm_3R | 5879485..5879592 | 76..183 | 100 | -> | Plus |
| arm_3R | 5879651..5879984 | 184..518 | 99 | | Plus |
