FMO11137.5prime Sequence
942 bp (942 high quality bases) assembled on 2011-12-01
> FMO11137.5prime
CAGTCGACATGAGAGTACCCACCATGCTGTCGGACATCGACCAACTGCCC
ACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTTGGGCGAGCCGAC
TGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCGAAACACCCGAGC
GCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTAGAAGCGGAGACG
GACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGATCAGATACCTGCG
GCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGATTAAGCGGTACT
ACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGACCTGAAGCCATCG
AACGAGGCCAACATCTTCAAGCACAACATCCTTACCGTCTTCCCCAACCG
AGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGGGCAAGCGCTGGA
AGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGAGCTGTGCTCTTC
CTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTGCGGAGCCGTTGT
GATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGTGGCAGTTTACGC
CTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGACTCGGTGCCGCTC
CGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGATTTTCCAGGTGGT
CTTTGCCCTGTTCAAGCCCTTCCTCAAGGAGAAGCTGCGCAGCACGATCA
TCTTCCATGGCACCGATCGCGAGTCCCTGCACAAATACATGTCGCCCAAG
TGCCTGCCAGCCGCCTACGGAGGATTCCGGGAGGCCAGCCGCATCGACAG
CGACCAGTGGTACCAGCTGCTGCTCAAGTGCGACACCGAGTTCGACACCA
TCAACTCGTACGGCTACAAGAGAAGCAAGCTTTCTAGACCAT
FMO11137.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RE | 2011 | CG10237-RE | 795..1707 | 9..921 | 4550 | 99.9 | Plus |
| CG10237-RC | 1418 | CG10237-RC | 202..1114 | 9..921 | 4550 | 99.9 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 508..1416 | 13..921 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436154..19436633 | 921..442 | 2385 | 99.8 | Minus |
| 2L | 23513712 | 2L | 19437666..19437845 | 192..13 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 441..287 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 287..191 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:08:05 has no hits.
FMO11137.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:12 Download gff for
FMO11137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 200..1117 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:24 Download gff for
FMO11137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:42 Download gff for
FMO11137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RC | 202..1119 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:42 Download gff for
FMO11137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19437032..19437126 | 193..287 | 100 | <- | Minus |
| 2L | 19437666..19437850 | 4..192 | 97 | | Minus |
| 2L | 19436149..19436633 | 442..929 | 99 | <- | Minus |
| 2L | 19436810..19436963 | 288..441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:24 Download gff for
FMO11137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436149..19436633 | 442..929 | 99 | <- | Minus |
| arm_2L | 19436810..19436963 | 288..441 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 193..287 | 100 | <- | Minus |
| arm_2L | 19437666..19437850 | 4..192 | 97 | | Minus |
